Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0926 ATGTGCAGCGGTTCCAAGAGGAAACCTACTCAAACTGGTTTGGTTATGGAGGATGATTATGGAAGAGAAGAAGGGCAGCATCAAAAGATATCTGCTTTGCTTGAACTTGCAGCTGCAGATGACCTAATTGGGTTCAAAGATGCAGTTGAGAAAGAGGGTTGTGATGTTGATGAGGCTGGGTCGTGGTTTGGAAGGAGGCTTGGCTCAAAGAAAGTGGGTTATGAAGAGAGGACACCACTTATGGTTGCTGCTATGTTTGGAAGCCTGAGAGTTTTGGCTTATATTCTTGGAACTGGCTGTGTTGATGTTAACAGGGCTAGTGGCTCGGATGGGGCTACTGCAATTCATTGTGCTGTTGCTGGGGGTTCTGCTGCTTCCCTTGAGGTTGTCAAGCTTTTGCTTGAATCATTGGCAGATGTTAGTACTGTTGATTCAAATGGTAACCGGCCATGCGATTTGGTTGTCTCTGGGGCTAACTCTATCCCCAATTCAAGGAAGAGGGTGCTGCAAGCCATGCTGGAAGGTACAGTTGGTACTGACAAGACGTTAGAGGATGTAGTTGGCCAAATCGAGGAACAACAAAGGGAAAACGTGGTGAACACGCCCCGTGTGTTGAAAGATGCGGCTGAGAGGAAGGATTATCCTGTTGATCACTCTCTTCCTGACATAAAGAACGGGATATATGGTACTGACGAGTTCAGGATGTATACATTCAAGGTGAAGCCTTGTTCAAGGGCTTATTCTCATGATTGGACCGAGTGTCCCTTTGTTCACCCAGGGGAAAATGCCAGGCGACGCGATCCAAGGAAATACCATTATAGCTGTGTGCCTTGTCCTGAATTCCGTAAGGGGTCATGCAGCAAGGGAGATTTTTGCGAGTATGCACATGGTATTTTCGAGTGCTGGCTTCATCCTGCCCAGTACCGGACCCGGCTTTGCAAGGACGAGGGTGCATGTACAAGAAGAGTTTGCTTCTTTGCTCACAAGCCTGAGGAGCTTCGCCCCCTCTATGCTTCTACTGGTTCGGCTATGCCATCTCCTAGATCCTACTCCAGTGGTTCTTCATTGGATATGGGTCCAGTTAGCCCAATAACACTTGGTTCTCCATCTGTTATGATACCACCTGCGTCAACACCGCCTTTGACTCCTTCTGGATCTTCCTCTCCTCTCTCCGGATCCATGTGGCAGACTCAATCTAACATCCCAACCCTGCAGCTTCCTAGAAGCAGCAGATTGAAAACTGCTTTAGCTGCTAGCGATATTAATTCGGATACTGAATTGCTTATGCTAATGATGGATGAGATGACTGGTCTTTCCTCCCCTTCTGGTTGGAGAAATTCCTTGACTAATAATAATCCATCTTATCACTATTCTTTGGGCGATCGTGCTGCAGATCTAAATAGGCTTTCAGGAGTGACGCCTACTAACCTTGACGACACTTTTGGGTCTGTCGACCCGTCAATTTTGTCCAAATTCAATGGAATCTCATTTGATGCTGCAGGACCTCAGTTACATCTTCCAACTGGATTGCAGATGCGCCAGAACATGAATCAGCAGCTGCGAGGCTATTCTTCTGGCCTTCCTTCTCCGAAAGTGATTGGATCCCCAAAATCCAGGGTTGATCCATCAGGGGAACCGACTTCACTGGCTTTTAATCCAAGACTTGCTGCCTTTTCACAGCGGAGCCAGAGCTTCATCGAGCGCAGCATGGGAAACCGTCATTCTGAGGTTCCTTCGCTGGCCACCTCTGTGGCAGCAAAGCCTTCTTTGGCATATTCTCATTGGGGCTCTCATGATGGAAAATTGGACTGGCCGATGCAGGGTGAAGAGCTGAACAAGCTGAGGAAATCTGCTTCTTTTGGATTTCGAAGCAGCAGCAATATTCCCTCGCCCAGGGCTGCGACCAGAATGTCAGCTGCAAAAGTTGACGAGCCGGACGTGTCTTGGGTTAGCTCGCTTGTGAAGGACGCTCCGGCACAGCCAGAGCCCGGCCAGTTTAGTGCCGAAGATCAGCAACAGCTGCAATGTCATCTCAACAATGGAACAGATGTGATTCCAGCATGGTTGGAGCAAATGTACATTGACCAGGAGCAACTGGTGGCATGA 2106 0.4848 MCSGSKRKPTQTGLVMEDDYGREEGQHQKISALLELAAADDLIGFKDAVEKEGCDVDEAGSWFGRRLGSKKVGYEERTPLMVAAMFGSLRVLAYILGTGCVDVNRASGSDGATAIHCAVAGGSAASLEVVKLLLESLADVSTVDSNGNRPCDLVVSGANSIPNSRKRVLQAMLEGTVGTDKTLEDVVGQIEEQQRENVVNTPRVLKDAAERKDYPVDHSLPDIKNGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDFCEYAHGIFECWLHPAQYRTRLCKDEGACTRRVCFFAHKPEELRPLYASTGSAMPSPRSYSSGSSLDMGPVSPITLGSPSVMIPPASTPPLTPSGSSSPLSGSMWQTQSNIPTLQLPRSSRLKTALAASDINSDTELLMLMMDEMTGLSSPSGWRNSLTNNNPSYHYSLGDRAADLNRLSGVTPTNLDDTFGSVDPSILSKFNGISFDAAGPQLHLPTGLQMRQNMNQQLRGYSSGLPSPKVIGSPKSRVDPSGEPTSLAFNPRLAAFSQRSQSFIERSMGNRHSEVPSLATSVAAKPSLAYSHWGSHDGKLDWPMQGEELNKLRKSASFGFRSSSNIPSPRAATRMSAAKVDEPDVSWVSSLVKDAPAQPEPGQFSAEDQQQLQCHLNNGTDVIPAWLEQMYIDQEQLVA* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0926 701 MobiDBLite consensus disorder prediction 1 20 - -
Amo17g0926 701 Pfam Ankyrin repeats (3 copies) 54 142 IPR002110 GO:0005515
Amo17g0926 701 MobiDBLite consensus disorder prediction 342 358 - -
Amo17g0926 701 ProSiteProfiles Zinc finger C3H1-type profile. 277 299 IPR000571 GO:0046872
Amo17g0926 701 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Amo17g0926 701 SMART c3hfinal6 307 330 IPR000571 GO:0046872
Amo17g0926 701 SMART c3hfinal6 272 298 IPR000571 GO:0046872
Amo17g0926 701 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Amo17g0926 701 MobiDBLite consensus disorder prediction 338 358 - -
Amo17g0926 701 SUPERFAMILY Ankyrin repeat 34 159 IPR036770 -
Amo17g0926 701 SMART ANK_2a 75 105 IPR002110 GO:0005515
Amo17g0926 701 SMART ANK_2a 110 142 IPR002110 GO:0005515
Amo17g0926 701 MobiDBLite consensus disorder prediction 370 392 - -
Amo17g0926 701 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 20 699 - -
Amo17g0926 701 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 277 297 IPR000571 GO:0046872
Amo17g0926 701 Gene3D - 7 211 IPR036770 -
Amo17g0926 701 Gene3D - 273 335 - -
Amo17g0926 701 PANTHER UNKEMPT FAMILY MEMBER 20 699 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0926 Amo-Chr17 22997436 23000928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0926 24 696 C2H2 Transcription Factor Family AT5G12850 39.232 1.24e-140 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo17g0926 Ank_2 5.2e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0926 - - aprc:113846970 946.421