Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0920 ATGTCCATAAACGAGGATGATGTGAAGAATGATTCTGATAATGATTTGGGTGATGATTTCGATTATCAACCGAATGCAGAAGACGACGATGTGGATTCGCTGGATTCTACTAGCAAGAGTGAAGAAGTTTGTGGTGTAAAAAGAATAGCAGATTTAATGGTGGAGGATATTTGGAACCTGGAGTTTAGGATAGAGGATGAGGCCTGCCAGTTTTATAATGCTTATTCTTGTTGGCATGGATTTGTAATGAGGAAGGACGACGTGGTTAGGGATAATCAAGGTAGAATCATTAGTAGGCAACTTGTTTGCAACAAAGAGGGCTGGAGGAATATGAGGTATCTTGATCTGGATAATAGATCAAGGGAGGCAAGGTCACTAACGCGAACCAAGTGTCCAGCTCGGCTTAGGGTAAAGCTTGACTACGGCTGCGGTAGATGGAAGGTATCATCTTTTGTGGAATCTCACAACCACGATCTGACGCCACCCCAATTTGCGCATCTGGTTCTGGCCTTAAAGGAGTATAGAAACAACGAATTAATCGCTGACTTTAAGTCTCAGTTCTCAGAGCCAGTGATGATTACCTCATTGGAGGTATATGAAAGATTTGCATCATGTTATTTCACTCGAAACATTTTTAAGGAAATTCGTAATGAGATTCAAAGGGCAGGGGCTTTGAATATCAAGGTACTAAGCACAACCTTGGACAAGGTTGAGTTCAGTGTGACTGCTCTCGGAGATTCGGCCAAAGATCGACGGGTGGAAGTCGATAGAGGTAAGAATCTGTTCTCGTGCTCGTGCAAGATGTTTGAATCACGTGGTATTCCCTGTAGTCATGTCTTCTATGCAATGAAGTTTGAAAACATACTTGAGTTTCCAGATTCGTTGATCTACAAAAGGTGGACAAAGAATGAAAAGAACGAATTTATTAGCACAGAAATGCCTGTGAATGATGACGTCGAAAGGGTCTTAAAGTTTCGAGTTGGTGCATTGGCATCGAATTGCAACAAGCTGTGTGATATTGCTTGCAAGGATCTTGCAGACTTTGATGAAGTCCAGTATGAACTTGTCAATTTAATTCTCCGTCTGCAGTCACGCAAACAAGTGAAGGAGTCACAGCAGGACAAGGGACATTCATTCACAAACTATGAATGCACTGTTGATGATGTCATGGATGAGAAATGTGACACACCACATGTGCAGATCGATGTCCGAGATCCATTTCCATCGTCAATGCCTTGTGGCAACAAACAAGGATCGTACATGGCATTGTTCACGTCGATGCATAGGACACTTTGA 1296 0.4236 MSINEDDVKNDSDNDLGDDFDYQPNAEDDDVDSLDSTSKSEEVCGVKRIADLMVEDIWNLEFRIEDEACQFYNAYSCWHGFVMRKDDVVRDNQGRIISRQLVCNKEGWRNMRYLDLDNRSREARSLTRTKCPARLRVKLDYGCGRWKVSSFVESHNHDLTPPQFAHLVLALKEYRNNELIADFKSQFSEPVMITSLEVYERFASCYFTRNIFKEIRNEIQRAGALNIKVLSTTLDKVEFSVTALGDSAKDRRVEVDRGKNLFSCSCKMFESRGIPCSHVFYAMKFENILEFPDSLIYKRWTKNEKNEFISTEMPVNDDVERVLKFRVGALASNCNKLCDIACKDLADFDEVQYELVNLILRLQSRKQVKESQQDKGHSFTNYECTVDDVMDEKCDTPHVQIDVRDPFPSSMPCGNKQGSYMALFTSMHRTL* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0920 431 Pfam FAR1 DNA-binding domain 70 160 IPR004330 -
Amo17g0920 431 PANTHER OS03G0181600 PROTEIN 171 377 - -
Amo17g0920 431 PANTHER OS03G0181600 PROTEIN 53 168 - -
Amo17g0920 431 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 171 377 IPR031052 GO:0006355
Amo17g0920 431 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 53 168 IPR031052 GO:0006355
Amo17g0920 431 MobiDBLite consensus disorder prediction 11 31 - -
Amo17g0920 431 MobiDBLite consensus disorder prediction 1 38 - -
Amo17g0920 431 ProSiteProfiles Zinc finger SWIM-type profile. 251 287 IPR007527 GO:0008270
Amo17g0920 431 SMART 26again6 262 289 IPR006564 GO:0008270
Amo17g0920 431 Pfam SWIM zinc finger 263 279 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0920 Amo-Chr17 22588799 22591018 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo17g0920 FAR1 1.2e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0920 - - ahf:112755379 372.474