Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0904 ATGTCTTGCTCCGTCGCAGTTTCCAATTCTCCAGTGTTCTCTCCTCCGTCGTCGCTATTCTACTCCAAGCCTTCAATCATTACTTCAATTTCTGCTGCTGCGGCTTCTTCTACGGCGTCGTCTTGCTCTTCTCCCGCTTCTTCTTCTTCTCCTTCTCCTTCTTCTCCTTCTTCGTCGCCGTTGCGTCTTCGTCTTCCCAAGCCGCCTATTCCCGCTTCGCTTTCCGGTGTTGTTGCCGTTTCAGCTTCCGCTACGTCACCAAACGGCACCGTTTTGAAGAGGAAGAGGCCTGCTAGGCTTGATATACCTGTTAGCTCCTTGGCCTTTGGGATTCCGCCCACACCCTCTGTTGCGCCGCCGCGTGATGTTGTGGAGGAGGAGCGTGATGCCTTCTCTGTTTATTGCAAGAGAGGGAGGAGGGAGTACATGGAAGATCGCTACTCCGCAGCTGATAACCTACGCGGCCAACAAAAACTGGCATTTTTTGGAATTTTCGATGGGCACGGTGGTGCAAAAGCTGCCGAATTTGTGGCAAATAACTTAGAAAAGAATGTGTTAGATGAAGTGATTCTTAGCGAAGAAGAAGATAGCATTGAGGAGGCTGTGAAGCGCGGTTATCTCAAGACTGATTCTGCTTTCTTGAAAAGTGATCTCCATGGCGGATCTTGCTGTGTCACCGCTTTGATTCGCAATGGTAACCTTGCTGTGTCCAATGCCGGCGATTGCCGCGCCGTTATAAGCAGAGGAGGGGTTGCTGAGGCCCTCACTTCCGATCACCGCCCTTCCCGGGAAGATGAAAGGGAAAGAATTGAGACTCTGGGTGGCTATGTTGATCTGTGCCGCGGAGTTTGGAGGATCCAAGGATCCCTTGCTGTGTCGAGGGGAATCGGCGATAGGCACCTAAAACAATGGGTGATCGCGGAACCCGAGACCAAAGTTATCAGGATCGAACCTGAACATGACTTGTTAATCTTAGCTTCAGATGGATTATGGGATAAGGTTAGTAACCAAGAAGCAGTAGACATCGCTCGACCTCTTTGCGTAGGTAGCAGCAAGCCGCAGCCATTGCTGGCATGTAAAAAGCTTGTAGATTTGTCCGTTTCCCGCGGCTCCATGGATGATACAAGTGTTATGCTTATCATGCTTGGCCGCTACATTTGA 1161 0.5056 MSCSVAVSNSPVFSPPSSLFYSKPSIITSISAAAASSTASSCSSPASSSSPSPSSPSSSPLRLRLPKPPIPASLSGVVAVSASATSPNGTVLKRKRPARLDIPVSSLAFGIPPTPSVAPPRDVVEEERDAFSVYCKRGRREYMEDRYSAADNLRGQQKLAFFGIFDGHGGAKAAEFVANNLEKNVLDEVILSEEEDSIEEAVKRGYLKTDSAFLKSDLHGGSCCVTALIRNGNLAVSNAGDCRAVISRGGVAEALTSDHRPSREDERERIETLGGYVDLCRGVWRIQGSLAVSRGIGDRHLKQWVIAEPETKVIRIEPEHDLLILASDGLWDKVSNQEAVDIARPLCVGSSKPQPLLACKKLVDLSVSRGSMDDTSVMLIMLGRYI* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0904 386 SMART PP2C_4 120 380 IPR001932 -
Amo17g0904 386 Pfam Protein phosphatase 2C 132 374 IPR001932 -
Amo17g0904 386 ProSiteProfiles PPM-type phosphatase domain profile. 130 382 IPR001932 -
Amo17g0904 386 SUPERFAMILY PP2C-like 130 383 IPR036457 -
Amo17g0904 386 Gene3D - 121 385 IPR036457 -
Amo17g0904 386 MobiDBLite consensus disorder prediction 39 61 - -
Amo17g0904 386 ProSitePatterns PPM-type phosphatase domain signature. 161 169 IPR000222 GO:0043169
Amo17g0904 386 MobiDBLite consensus disorder prediction 39 66 - -
Amo17g0904 386 CDD PP2Cc 131 380 IPR001932 -
Amo17g0904 386 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 3 385 - -
Amo17g0904 386 PANTHER PROTEIN PHOSPHATASE 2C 3 385 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0904 Amo-Chr17 22287203 22289413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0904 1 386 PP2C-type Phosphatase Gene Family AT2G30020 62.469 1.66e-160 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0904 K17506 - gmx:100797934 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0904 17 22287203 22289413 Amo17g0904 17 22287203 22289413 ECH
Amo17g0904 17 22287203 22289413 Amo07g0938 07 17287303 17289241 hybridization