LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo17g0891	ATGTACTCACGCCCACATCATAGAAGAGAGAGAGAGCAGCTAGTCACCCCCACCTTCTCCATCGTGCGTCGCTCACTGTTTTCGTGGCCTCACCTCTGTTCGCGATGGTTGACTGATTCTATTACATTGAAAAAATCAGTGCATTTAGGGCTTCAAGGTGTGGCTCTAGCTTCTGGAATATTTGGAATTTGGATTAATTTTCATGGGAAGGATGGTATTGTGGTCAATTTCTATAGTCTTCATTCATGGATGGGTTTGATTTGCACTTCCCTCTTTGGAACAGAGTTCAACCAAGAAGAAGGACGAGCTACATTGACGTGTGATAAACACATGGCTTCTTCCTCTTCCTCTTCCTCTCCAGCTCCGTTACAGACTACTATGCTTCTTGGTTCGCCTAGTTTCCCAAACGCCATTGCTTGGTCCCAAGACAACCTCCTTGCTGTTGCTACCACCCATTTCGTTACCATTCTTAGACCAGACATGCCTCATGGACCACGTGGAATAATCAAAATCTCTCCAATTGAGCCATTCCTCTYTGGCTTTGTTGAAAGAAAAGATTTAATCTCTGGATGCCTCCTCCCTATTAGTTTGTACCGTGATGATAAGCCTGTTGTTCAGTCAATATCATGGTCGCCACTTGGCATTGCTTTGAATTCAGGGTGCTTGTTGGCTGTTTGCACTAGCGAAGGACACGTGAAGGTTTATCGTCCACCCTTTTGTGATTTCTGTTCAGAATGGATTGAGGTTGTGAACGTTAGTGAACGTCTATTTGAATATTTGCAATGTACTGAGTTTCAAGGCACGGGGACTCCATTAGAGTTTTCCAAAAGAAATGCATCAGATGAAATAGATTCTGTGGCTAAACCTAAAAAGAAATCCTTGAAAACAGTGCCCGAGAACCACACGTTGCCTGTGATAAGTGCTGATCAATATGCTACTCGCAGCGCAGTGCTAAGCTCAATTGTTGTTTCATGGTCTCCTTTACTGCATGATATTCAYGCTACTGTCAGCCTACTTGCTGTTGGAGGGAAGTCTGGTAAAATTTCTTTATGGAGATTTTATGCACCAGATTGCTATACTATTGAGGGTGGAAAAATCCCATCTGCTGTGAAATTTGTTGGATTTCTTGAAGCACACAATTCATGGGTTACAACAATAAGTTGGTTGTCATTTTCTGTTAATTCCTCAAATCCACAAATTTTATTAGCTACTGGAAGCTCTGATGGGAGTGTCAAGGTTTGGTTGGGTGACTATCACAAATTGATTAAATCAACAGAAGTGGATCAGAATGTGTTCATTTTGTTGAAGGAGGTTATCACTGTCAATGTTGTCCCAGTTTCTGTACTTTCAGTAACTGTGCATGTTCAATGCTCTTCCAAGATGCTTTTAGCAATAGGCAAAGGTTCTGGYTCCTTTGAAATATGGCTATGTGACATATCTTCTAAGGAATTCAACAAGCTTGGTTCATATGATGCACATGACTATATCGTAGATGACTTCTTGAAGCTGCAATACTTTGTTGATTTCTTCAATGTTGATTTCCTCCAGGTTACTGGCTTGGCATGGGCATTTGGTGGAAGATGTTTGTACAGCTGTAGCCAGGATAATTTAGTGCGTAGCTGGATTTTGCGCGATAGATGCCTAGAWGAAGTACCTGTTCATATGCCTCATAATAACAATTCATCCAGCGCTTCAAATGATGTATATGATTCATGCCTTGGTGCAGCAGTTTCACCTGGAAATCTTGTTGTCGCTACTGTTCATTGCTTTGATGTTGAGAAACTGAATCGAATGTATGAAGGAAGGGTACTGAGAGCAGCTATTGAWTACCATTGGATTGGTGGGCTACATGTGGATATTTGCTTGAATCGTCCTGTTCCATTTTACACTGAAGAACWTTCCGGTTTGGCAGAGAAAGATTTAACCAATTGGGGTTCCAATATCATATGGTCTTTGAACCAATATCAGTGTCTTGATAGGCCCCTAGTTCTTTTGGATATAATTTTGGCATTATTGGACTTCAAGGTCAGCATGCCAAGATATGTAGAGCATTTACTCATCAAGTGGATCTCTCTGTCTTTTCCGGGATTTCATACGGACCTTCCCARTGAAAAGACTTTACTGCAGGTCTCTTCAAGTTTGTCAGGTGTTCCTTCTCGCATGCTACACTTGCTCAATATAATTTGTAGACGAGTAATGTTGGCGCAGCTGGATGCTGATGAAATCACACGAATATCCAGCGAAGTTCAAAACACTAAAGGGGAATGCTGTTCTATGGACGAACAAGTAACCAAGTGGATAGCAATTCTTGGAAGCAGTGAAAGAGAACTCCGTGAAAGGCTTGTYGGTTTTAGTTTTTGTGCTTCTCAAACTAGCAAGTCCCGTCCAGGGGCAACTCCTTTCCAAACYGGTCATTGGTATCCTGTTGGACTAGCACAAATGGAACAATGGATTGCGCTAAACAACGATCATGTACGTGGCGAGTTGAAATCCATTGCATCAGAGGTTACCAATGAGAAAAGATGTTCAGCTSTGGAGTCATGCAGTTATTGTTCAGCATCAGTTCCATTTGAGTCCCCAGAGTTTGGTTTATGTCAAGGCAAAACTTCAGGCAGTGGCAGCAATGATAAGCGGCATAAGTTATCAAGATGCGCCGTTAGTATGAAGGTTTGCCCTAGTATCCCACTGTGGTTTTGTGTGTGYTGCCATAGGGTGGCGTTTAGGTTGGCGCCTGACCCACTTTTTCGAATGTCTTCGTCTCAGTTTGATTCTGATTTTGTAACCAAATCTTTGTCTCGAGCAGTTTCCTCAAAACCATTGTGTCCCTATTGTGGGATATTGCTACAGAGACGTCAACCTGATTTTCTAGTTTCTCCATTACCTGTRTGA	2889	0.4202	MYSRPHHRREREQLVTPTFSIVRRSLFSWPHLCSRWLTDSITLKKSVHLGLQGVALASGIFGIWINFHGKDGIVVNFYSLHSWMGLICTSLFGTEFNQEEGRATLTCDKHMASSSSSSSPAPLQTTMLLGSPSFPNAIAWSQDNLLAVATTHFVTILRPDMPHGPRGIIKISPIEPFLXGFVERKDLISGCLLPISLYRDDKPVVQSISWSPLGIALNSGCLLAVCTSEGHVKVYRPPFCDFCSEWIEVVNVSERLFEYLQCTEFQGTGTPLEFSKRNASDEIDSVAKPKKKSLKTVPENHTLPVISADQYATRSAVLSSIVVSWSPLLHDIHATVSLLAVGGKSGKISLWRFYAPDCYTIEGGKIPSAVKFVGFLEAHNSWVTTISWLSFSVNSSNPQILLATGSSDGSVKVWLGDYHKLIKSTEVDQNVFILLKEVITVNVVPVSVLSVTVHVQCSSKMLLAIGKGSGSFEIWLCDISSKEFNKLGSYDAHDYIVDDFLKLQYFVDFFNVDFLQVTGLAWAFGGRCLYSCSQDNLVRSWILRDRCLXEVPVHMPHNNNSSSASNDVYDSCLGAAVSPGNLVVATVHCFDVEKLNRMYEGRVLRAAIXYHWIGGLHVDICLNRPVPFYTEEXSGLAEKDLTNWGSNIIWSLNQYQCLDRPLVLLDIILALLDFKVSMPRYVEHLLIKWISLSFPGFHTDLPXEKTLLQVSSSLSGVPSRMLHLLNIICRRVMLAQLDADEITRISSEVQNTKGECCSMDEQVTKWIAILGSSERELRERLVGFSFCASQTSKSRPGATPFQTGHWYPVGLAQMEQWIALNNDHVRGELKSIASEVTNEKRCSAXESCSYCSASVPFESPEFGLCQGKTSGSGSNDKRHKLSRCAVSMKVCPSIPLWFCVCCHRVAFRLAPDPLFRMSSSQFDSDFVTKSLSRAVSSKPLCPYCGILLQRRQPDFLVSPLPV*	963

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo17g0891	962	SUPERFAMILY	WD40 repeat-like	129	560	IPR036322	GO:0005515
	Amo17g0891	962	PANTHER	GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 4 FAMILY	122	497	IPR044230	GO:0000127\|GO:0004402\|GO:0006384
	Amo17g0891	962	PANTHER	GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 4 FAMILY	515	947	IPR044230	GO:0000127\|GO:0004402\|GO:0006384
	Amo17g0891	962	PANTHER	GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 4	122	497	-	-
	Amo17g0891	962	PANTHER	GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 4	515	947	-	-
	Amo17g0891	962	Pfam	Eukaryotic cytochrome b561	39	94	IPR006593	-
	Amo17g0891	962	Pfam	Transcription factor IIIC subunit delta N-term	202	269	IPR024761	-
	Amo17g0891	962	SMART	WD40_4	369	415	IPR001680	GO:0005515
	Amo17g0891	962	SMART	WD40_4	191	236	IPR001680	GO:0005515
	Amo17g0891	962	SMART	WD40_4	503	542	IPR001680	GO:0005515
	Amo17g0891	962	SMART	WD40_4	290	352	IPR001680	GO:0005515
	Amo17g0891	962	Pfam	WD domain, G-beta repeat	374	414	IPR001680	GO:0005515
	Amo17g0891	962	ProSiteProfiles	Trp-Asp (WD) repeats profile.	376	414	IPR001680	GO:0005515
	Amo17g0891	962	Gene3D	-	194	595	IPR015943	GO:0005515
	Amo17g0891	962	Gene3D	-	24	163	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo17g0891	Amo-Chr17	21597404	21607030	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo17g0891	32	96	Chloroplast and Mitochondria Gene Families	AT1G26100	58.462	2.09e-18	84.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo17g0891	-		-	ahf:112745959	1235.71