Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0884 ATGGTCACCTCTATGTACTCATTTTACTTTGAAAAAGTGGCAAAGGAGAAACCAGATGCATATAGTTTGACTTCCTGTGTTGCATTTGTTGTGATATCGCTAAGCCTGTCGAGGCAGATCCAATGCGTCTTCGAAGTGGAGCTATTGAGCTCTTATCATACAACTCATGCAGATAACTATGCTTTCATCGTTCTTCATTCCACTTTAGATGCATCATCATCATCAGGTGTTTCTCTTACAATCCAAGATCAACATCACCTTGTTGTGCTTGTAGATTCAAGTCTGAGTTCACAGCAAGCAAATTCTACTATTGATGATGTCATGCCACAACTAACTTCATCTTATCTCGAACGTGAGATTAACATTTGGATTAAAGTCTCAAATCTAACGTTGGGGCTTGTGTTTCCCAATGAAAGGAGGCTATGCGAATGCGTCTTTTCAGGTTTCACCTCAACTGTGGATCTTGCTTTTGCTGAGATTTGCAGGGAATTCATTATTAGCCATCTGAATTTCTGTAACGGCTTTGTAGCTGAGAGCATTGTCTCCAAAACACTCATGTTTTTTCCTAGAATTTCAAAACTGTTCAAGACAAAATCAAGTAATCAAGCAATCAACACATGGAAGAAACTGGGGCAAGCAATCATGGATATTTTCAAGCACTTGGAGGATAGGATTTATCGCGACCGTGATAGTGACATGGTATGTTTTCTTCGTGGAATGTATCCAATCTCTTGCGATGTGATGGACTGCCTCAGTAGCTTTTGTGAATCCTGGAACTTTCTTAAGTTGGAGAGAGTTTTCAAAGAGCACCCCATGATTGTGGAGTTATTGGATAGCCAGTTGGAAGTTGAGTCCAAAAACCACACAAACTCTACTGAGGGATGTATTTTTGTTATGAACAATGTTAGTTACATAGAAAACAAGGTAATAGAGTGTCAATCGAGAATAGGCAGTGTTATTCTCCAAGATGGCACAATAAGAAAACTCAATGCAAAGATTATTGGAATTTTGGAGCAAGGCAGCAATGAACATGAAGAAGAAGCAGTGTCTACCTTCATAATCTCGGATGAGCAGCAAAGAGGGGAAATGCTACAATCCATAAAGGAAAATCTTAACGTTCTTGGCTTGCATGCTTATGAGTTTATTGATGCTCAACTCAACAAGTTGTTTCTTGGAGTCAGCTGGGAACTTGATGTTCTATAG 1203 0.394 MVTSMYSFYFEKVAKEKPDAYSLTSCVAFVVISLSLSRQIQCVFEVELLSSYHTTHADNYAFIVLHSTLDASSSSGVSLTIQDQHHLVVLVDSSLSSQQANSTIDDVMPQLTSSYLEREINIWIKVSNLTLGLVFPNERRLCECVFSGFTSTVDLAFAEICREFIISHLNFCNGFVAESIVSKTLMFFPRISKLFKTKSSNQAINTWKKLGQAIMDIFKHLEDRIYRDRDSDMVCFLRGMYPISCDVMDCLSSFCESWNFLKLERVFKEHPMIVELLDSQLEVESKNHTNSTEGCIFVMNNVSYIENKVIECQSRIGSVILQDGTIRKLNAKIIGILEQGSNEHEEEAVSTFIISDEQQRGEMLQSIKENLNVLGLHAYEFIDAQLNKLFLGVSWELDVL* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0884 400 Pfam Exo70 exocyst complex subunit 273 332 IPR046364 GO:0000145|GO:0005546|GO:0006887
Amo17g0884 400 Pfam Exo70 exocyst complex subunit 123 259 IPR046364 GO:0000145|GO:0005546|GO:0006887
Amo17g0884 400 SUPERFAMILY Cullin repeat-like 115 369 IPR016159 -
Amo17g0884 400 PANTHER PROTEIN, PUTATIVE-RELATED 115 333 - -
Amo17g0884 400 PANTHER EXOCYST COMPLEX PROTEIN EXO70 115 333 IPR004140 GO:0000145|GO:0006887
Amo17g0884 400 PANTHER EXOCYST COMPLEX PROTEIN EXO70 8 80 IPR004140 GO:0000145|GO:0006887
Amo17g0884 400 PANTHER PROTEIN, PUTATIVE-RELATED 8 80 - -
Amo17g0884 400 Gene3D Exocyst complex component Exo70 88 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0884 Amo-Chr17 21277949 21279496 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0884 116 309 EXO70 exocyst subunit family AT5G58430 36.607 3.07e-31 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0884 - K07195 adu:110274018 154.451