Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0870 ATGCCTCCATTGCTGTTGTGGAGAGTGACATTGTGGCCTTCCTCTCACACCTCTTCCATACGCCTCATTCTATTTATTTTTGAGCTCCTGAGTGGACCAGTAGCAGCAGTGACGATAGCTTTTCCTATGAGGATGAAGATTCTCATCAAGATTTCTGAGTTTGACGAGGAGGTTCATGCTTATAAAGCATATGTAAAGTATGCGAGAGATATGGGTTTTGCTGTTCGTAAAAGAGACTTGTCAATAGATGAGGATGGAAATTTGAATAGAAGGTACTATGTTTGCAATCGCCAAGGAACAATGGATCTAAAACACTATCGTCTAGTTGATAGAAAGAGGAATCATAAGCCAGAGACAAGAACTGGTTGCAAGGCACATTGTTCTGTTTATTTGGATAAGTTGTCCACGAAATGGAGAGTTAAGACACTAGAAGAGGAGCACAACTATCCAATGATCCCAGAACAATTTGTTCATTTAATTTCTAACCATCGGAAGTTGACTGAGGCTGACAAAGCCCGGATTGTTTGCATGAAGGAATCTGGGTTTCAAACTTCTCAAATTGTTGGGTTTTGGCTAAGCTTGCTGGTGGCTATGGTAACTTTAATTTCATGA 612 0.4052 MPPLLLWRVTLWPSSHTSSIRLILFIFELLSGPVAAVTIAFPMRMKILIKISEFDEEVHAYKAYVKYARDMGFAVRKRDLSIDEDGNLNRRYYVCNRQGTMDLKHYRLVDRKRNHKPETRTGCKAHCSVYLDKLSTKWRVKTLEEEHNYPMIPEQFVHLISNHRKLTEADKARIVCMKESGFQTSQIVGFWLSLLVAMVTLIS* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0870 203 Pfam FAR1 DNA-binding domain 64 152 IPR004330 -
Amo17g0870 203 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 53 173 - -
Amo17g0870 203 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 53 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0870 Amo-Chr17 20951283 20952439 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo17g0870 FAR1 4.1e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0870 - - aip:110265015 273.092