LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo17g0862	ATGGCATCAAGATCATATGCTAATCTCTTTGACTTAGCTTCTGGAGGAGATTTGCTGGATATTCCTCGCACCCCAAGAGCTCTTCCAAGGATTATGACTGTTCCTGGAATTATCTCTGACCTTGATAGTTGTGGTGCTAATGATGGGGATTCAGATGTTAGCTCCTCTGGTTGCCGGGAGCGGAAGATCATTGTCGCAAACATGCTGCCATTGCATGCTAAAAGAGATGCAGAAAATTCTAAGTGGTGCTTCAGTCGGGATGAGGATTCAATTTTACTACAATTGAAAGATGGTTTTTCTTCTGATACGGAGGTAATTTATGTGGGTTCACTTAAGGTTGATATAGATGCCAGTGAGCAGGAAGAAGTTGCCCAGAGATTACTGGATGACTTCAATTGTGTACCTACCTTCCTATCGCATGATCTCCAGAAAAAGTTCTATCTTGGGTTTTGCAAGCAGCAGCTCTGGCCTCTCTTTCATTATATGCTACCAGTGTGCCCAGATCATGGTGATCGCTTTGACCGCATACTATGGCAGGCTTATGTTTGTGCAAACAAAATATTTGCCGACAAGGTTATGGAAATAATCAATCCTGATGATGATTTTGTCTGGGTTCATGATTATCACCTGATGGTTTTGCCTACTTTCTTGAGGAAGCGATATAATCGAGTTAAACTTGGATTCTTCTTGCACAGTCCTTTTCCTTCATCTGAAATTTATCGAACTTTACCTGTAAGGGATGAAATTTTGAGGGGACTTCTGAATGCTGATTTAATTGGTTTTCATACATTTGATTATGCACGCCACTTCCTTTCTTGCTGCAGCAGAATGCTAGGTCTGGACTATGAATCTAAGCGAGGACATATAGGACTTGATTACTTTGGCCGTACTATATTTATCAAAATTTTGCCGGTTGGCATTCACATGGGTAGGCTTGAATCTGTATTAAATCTTCCTTCTACATCTGCTAAACTAAAAGAGATTCAGGAAGAGTTTGAGGGTAAGAAGGTGATTGTTGGTGTTGATGATATGGATATTTTTAAAGGCATCAGTTTGAAACTTCTAGCTGTGGAGCATCTGCTGCAGGAGAATCCAGATATGCAGGGCAAAGTTGTCCTTGTTCAAATTGTAAATCCTGCGAGGGGTTTAGGGAAGGATGTTCAGGAAGCAAAGAAGGAAACATATTTAATTGCCCAGAGGATTAATGATACCTATGGATCAGAGGAATATCAGCCTGTCAAACTCATTGACCGCCATGTTCCTCGATTTGAGAAGAGTGCTTATTATGCTGTAGCTGAATGTTGCATTGTAAATGCAGTAAGGGATGGCATGAACCTTGTCCCATACAAATATCTTGTCTGCAGGCAACGAACTGCTAAACTAGATGAAGCATTGGGTAGGAAAGTTGATTCTCCTCGAACAAGCATGCTTGTTGTGTCTGAGTTCATTGGTTGTTCACCTTCTCTTAGTGGGGCTATCAGGGTCAATCCCTGGGACATTGATGCTGTTGCTGATGCTCTGAGCTTGGCCCTTACAATGAATGATTCTGAGAAGCAATTGCGCCATGAGAAACACTATCGGTATGTCAGTTCTCATGATGTAGCATATTGGGCACGCAGCTTTATGCAGGATTTGGAGAGAGCCTGCAAAGATCATTACACCAAAAGGTGCTGGGGAATTGGCTTGGGTCTAGGGTTTAGAGTTGTTTCTCTTTCTCCTGGATTTAGGAAGTTGTCTATTGATCATGTTGTTTCAGCTTACAAGCGAACCAATAGAAGGGCCATCTTTCTTGATTATGATGGTACTGTTGTACCACACTCTTCTATAAATAAAGTCCCCAGCCCGGAAGTCATATCTGTGCTAAACGCTCTGTCTAGTGATCCCAAGAACATTGTTTTCATTGTTAGTGGGAGGGGAAGAGATTCTCTGAGTGATTGGTTCAGTTCATGCCAATTGCTGGGACTTGCTGCTGAGCATGGTTACTTTTTAAGGTGGAGTAGAGATTCTGAATGGGAATGCAGTCACTTGTCTGCAGACCTTGACTGGAAAAACATAGCAGAACCTGTCATGCAGTTGTATACAGAGGCAACTGATGGTTCCAGCATTGAAATTAAGGAAAGTGCTTTGGTGTGGCATCATCAAGATGCAGACCCGGATTTTGGTTCCTGCCAAGCCAAGGAATTGTTGGATCACTTGGAAAGTGTACTTGCAAATGAACCAGCAGTTGTTACGAGAGGCCAGCATATTGTTGAAGTTAAGCCACAGGGAATAAGCAAAGGTTTGGTAGCCGAAAAGGTTATATCAACCATGTTTAATGGTGGTAATCCACCGGATTTTGTTATGTGCATTGGCGATGATAGGTCTGATGAAGACATGTTTGAGAGCATTTTAAGGTCAGTATCCTGCCCGTCATTACCAGCGACTCCAGAGATTTTTGCCTGCACTGTAGGTAGGAAGCCGAGCAAGGCGAAGTATTTTCTTGACGACACTTTGGATGTAGTGAAGTTACTTCAGGGTCTTGCTTCTTCATCCAATCCAAAACCCAGGCATCTTGCGCAATTCCAAGTTTCTTTCGAGAGCACAATTTGA	2589	0.4245	MASRSYANLFDLASGGDLLDIPRTPRALPRIMTVPGIISDLDSCGANDGDSDVSSSGCRERKIIVANMLPLHAKRDAENSKWCFSRDEDSILLQLKDGFSSDTEVIYVGSLKVDIDASEQEEVAQRLLDDFNCVPTFLSHDLQKKFYLGFCKQQLWPLFHYMLPVCPDHGDRFDRILWQAYVCANKIFADKVMEIINPDDDFVWVHDYHLMVLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNADLIGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYFGRTIFIKILPVGIHMGRLESVLNLPSTSAKLKEIQEEFEGKKVIVGVDDMDIFKGISLKLLAVEHLLQENPDMQGKVVLVQIVNPARGLGKDVQEAKKETYLIAQRINDTYGSEEYQPVKLIDRHVPRFEKSAYYAVAECCIVNAVRDGMNLVPYKYLVCRQRTAKLDEALGRKVDSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADALSLALTMNDSEKQLRHEKHYRYVSSHDVAYWARSFMQDLERACKDHYTKRCWGIGLGLGFRVVSLSPGFRKLSIDHVVSAYKRTNRRAIFLDYDGTVVPHSSINKVPSPEVISVLNALSSDPKNIVFIVSGRGRDSLSDWFSSCQLLGLAAEHGYFLRWSRDSEWECSHLSADLDWKNIAEPVMQLYTEATDGSSIEIKESALVWHHQDADPDFGSCQAKELLDHLESVLANEPAVVTRGQHIVEVKPQGISKGLVAEKVISTMFNGGNPPDFVMCIGDDRSDEDMFESILRSVSCPSLPATPEIFACTVGRKPSKAKYFLDDTLDVVKLLQGLASSSNPKPRHLAQFQVSFESTI*	863

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo17g0862	862	PANTHER	ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 9-RELATED	1	853	-	-
	Amo17g0862	862	SUPERFAMILY	HAD-like	593	840	IPR036412	-
	Amo17g0862	862	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	61	550	-	-
	Amo17g0862	862	Pfam	Trehalose-phosphatase	596	829	IPR003337	GO:0003824\|GO:0005992
	Amo17g0862	862	Gene3D	Glycogen Phosphorylase B;	314	530	-	-
	Amo17g0862	862	CDD	GT20_TPS	61	546	IPR001830	GO:0003824\|GO:0005992
	Amo17g0862	862	Pfam	Glycosyltransferase family 20	61	546	IPR001830	GO:0003824\|GO:0005992
	Amo17g0862	862	Gene3D	Glycogen Phosphorylase B;	55	313	-	-
	Amo17g0862	862	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	594	795	IPR006379	-
	Amo17g0862	862	Gene3D	-	592	707	IPR023214	-
	Amo17g0862	862	Gene3D	-	722	853	IPR023214	-
	Amo17g0862	862	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	1	853	IPR001830	GO:0003824\|GO:0005992
	Amo17g0862	862	TIGRFAM	T6PP: trehalose-phosphatase	591	840	IPR003337	GO:0003824\|GO:0005992
	Amo17g0862	862	CDD	HAD_TPP	594	835	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo17g0862	Amo-Chr17	20583283	20588035	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo17g0862	1	862	Trehalose Biosynthesis Gene Families	AT1G23870	74.770	0.0	1362

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo17g0862	K16055		-	gmx:100775779	1580.46