Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0822 ATGGCCACAGACGCAACCGCCAAATTTCAAAAGAACCCCGATTTCCGGCCGGACTTCCATCCGCCAGAGAATCTCCCCGCCGCCGTAACAACCGCTGCCGCAGCACACGACGGCCTCCACTTCTGGCAGTTCATGATCGCCGGCTCCATCGCCGGCTGCGTGGAGCACATGGCAATGTTCCCCGTTGACACCGTCAAGACCCACATGCAAGCCCTCGGCTCCTGCCCCATCAAGTCAGTCAGCGTTCGTCAGGCCCTCCGTTCAATTCTCCAATCGGAGGGTCCCTCCGCTCTCTACCGCGGCATCGCCGCCATGGGCCTTGGCGCAGGACCCGCTCACGCCGTCTATTTCTCYGTCTACGAGACCTGCAAGAAACGGTTTTCCAGTGGAAACCCTAATAACCCCATTGCTCACGCTGCTTCTGGTGTTGTCGCCACGGTGGCGAGCGACGCCGTTTTTACCCCTATGGATATGGTGAAGCAGAGGCTCCAATTGAGCAATAGTGWTTACAAGGGTGTTTGGGATTGTGTTAAGAGGGTGATGAGTGAGGAAGGGTTTGGGGCGTTTTATGCTTCATATAGGACCACGRTTTTGATGAATGCACCGTACACGGCGGTGCATTTTGCAACATATGAGGCTGCGAAGCGAGGATTGATGGAGGTGTCGCCGGAGAGCGTGGATGATGAGAGGTTGGTGGTTCATGCCACRGCCGGGGCTGCTGCCGGTGCTTTGGCTTCTGCAGTCACAACGCCGCTGGATGTTGTTAAAACTCAATTGCAGTGTCAGGGTGTGTGTGGATGCGATAGGTTCACGAATGGTTCAATTCAAGATGTAATTAAAACTATAGTGAAAAAGGATGGATACAGTGGGTTGATGCGAGGATGGATTCCAAGGATGCTGTTTCATGCTCCTGCAGCTGCTATCTGCTGGTCTACATACGAAGCGGGAAAGTCCTTTTTTCAAGATTTCAATCAACCAAAGGATGTTGACACTGTCACTTAA 1002 0.5339 MATDATAKFQKNPDFRPDFHPPENLPAAVTTAAAAHDGLHFWQFMIAGSIAGCVEHMAMFPVDTVKTHMQALGSCPIKSVSVRQALRSILQSEGPSALYRGIAAMGLGAGPAHAVYFSVYETCKKRFSSGNPNNPIAHAASGVVATVASDAVFTPMDMVKQRLQLSNSXYKGVWDCVKRVMSEEGFGAFYASYRTTXLMNAPYTAVHFATYEAAKRGLMEVSPESVDDERLVVHATAGAAAGALASAVTTPLDVVKTQLQCQGVCGCDRFTNGSIQDVIKTIVKKDGYSGLMRGWIPRMLFHAPAAAICWSTYEAGKSFFQDFNQPKDVDTVT* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0822 333 ProSiteProfiles Solute carrier (Solcar) repeat profile. 39 126 IPR018108 -
Amo17g0822 333 SUPERFAMILY Mitochondrial carrier 37 314 IPR023395 -
Amo17g0822 333 ProSiteProfiles Solute carrier (Solcar) repeat profile. 229 319 IPR018108 -
Amo17g0822 333 Pfam Mitochondrial carrier protein 230 322 IPR018108 -
Amo17g0822 333 Pfam Mitochondrial carrier protein 134 220 IPR018108 -
Amo17g0822 333 Pfam Mitochondrial carrier protein 39 129 IPR018108 -
Amo17g0822 333 PRINTS Mitochondrial carrier protein signature 190 208 IPR002067 GO:0055085
Amo17g0822 333 PRINTS Mitochondrial carrier protein signature 57 71 IPR002067 GO:0055085
Amo17g0822 333 PRINTS Mitochondrial carrier protein signature 44 57 IPR002067 GO:0055085
Amo17g0822 333 PRINTS Mitochondrial carrier protein signature 148 166 IPR002067 GO:0055085
Amo17g0822 333 PRINTS Mitochondrial carrier protein signature 238 260 IPR002067 GO:0055085
Amo17g0822 333 Gene3D Mitochondrial carrier domain 136 333 IPR023395 -
Amo17g0822 333 PANTHER MITOFERRIN-1-RELATED 1 327 - -
Amo17g0822 333 MobiDBLite consensus disorder prediction 1 22 - -
Amo17g0822 333 PANTHER MITOCHONDRIAL CARRIER PROTEIN, EXPRESSED 1 327 - -
Amo17g0822 333 ProSiteProfiles Solute carrier (Solcar) repeat profile. 133 217 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0822 Amo-Chr17 19574433 19577838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0822 140 330 Chloroplast and Mitochondria Gene Families AT1G07030 27.835 7.29e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0822 K15113 - gmx:100802640 570.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0822 17 19574433 19577838 Amo17g0822 17 19574433 19577838 ECH
Amo17g0822 17 19574433 19577838 Amo07g1026 07 19067269 19070634 hybridization