Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0800 ATGCCTAACTATTCAACTCATGAAGATCAACTTGATGCTCTCCATCGTTGCAGCCATCTTTTGCTACTCTCTCATGATTCTCCGTTCCAAATCGGAACCTCAACCACAATCCAGAACGCTGAGAATGCAAGACCATGTACAGTAGAAATCGACGCTGCAAATGGAGTATTTGAAAGCGGAGATGACAACTACTTAAATGCCTTCCAATCGAGTTACGACGATGGGGAACAACAAATGCATGATGATGGATACAGTTGGAGAAAATATGAAGAAAACCCATTAAGAAGGGGAAATCAGACAAGCTGCTACAGATGCGCACATCCCAATTGCAAAGTTAAGAAGAAAGTAGAGAGAACAATTGATGGGGAAATTATTCATGTAAACTACAAAGGTACTCATGCCCATTGTCGCAAGCCTAGATTCACTATAAAGAGGAACTCATCATCTGAATCCTTTTATTCATATCTATCGTCAAAGCCTTTCCACACTGATATGATAGATCAATCATTATTGGCCTTCAATGGCAATGGACAATTGGATCATGGAGCAGATGAAGATCACTCAAGTGGCCATCTAGTAGAGAATCCGTTGGAGTCAGTTATAGCTGTTATAGTTTGCGTACTTGGATTGCTCTGTTACGCTTTAAGTTCCTCCTTCAACTCTCTGTTCGGGAAATGGAACTTGCTGAAAACATTTCTTTACTGTGTCTTCAGTTTCATCATCTGCACTGCAGTTTTGTTTGTAAAGGTATCACATGGCCCAGGAAGTCTCCGACTAAAAACTCATCTGGCATTTTTGGTTCTGATGATTACATCTTTCTACTCCTTTTACTTTGATAAAGCCGTGAATGGGAAACCAGATGCATACTCTATAGCTTCTTGTGCTGCTTTTGCTGTGATGTTTCTTGGCTTGTCAAGGCATAGTCACTGCGGATTTGAAGTGGACTTGCTCTATTTCTTTCTCGCGGCTCTAACAATACAACTCATGAGGATAAAGTGGGTTTTTGGAATACTTGGAGCATGTTATAGCTATGCTCTCATCATGATCCATAGCTGTGTGGATGCTCAACAAGAAATAAATGGATATCATGGAGTCCCAGAAGAGCCTCATGTCATTCAAGTAGATCCACCAGAACTGTTATTAAATTCTAGCATTACTCAAGACAGCGCAATCACCGAAGTTGATTCGCATTGGCAAGAAGTCAATAATGATTTTGCTCTCATCAAGCCGGGCCTCTTGTCTTCTCTAAAGGCACTTAAGAAGCAGAATCGAAAACTTTTAGGCCTACTTTACGGCCAGTCCCTGATGGAGCCTTTTCATCTCGATGACAATTTGTTAATCGACATGCTTCCGTGTGAAATTATCAACAACATCAACGAAACTTTTAAGATGGCACTGGCTGCTGGATATGAGAAGGAGTGCTGCCACTTATACAGCAATTGCCGCAGGGAGTTCTTGCAACAGTTTCTTTCAGAATTAGAGTTGAAACACACACCTGAGGACCATAATGTTTTCATCACACACAACATTCTAAGTTGGAACAGAACTTTTAAAATCGCCTTCCGTGTACTATTTCTATATGAACGCAGGCTTTGTGATCGCATCTTCTTGGGATTCTCCTCAGTGGGGGATCTATCTTTTGTGCTGGCTTGCAAGGAACTCACAACTCATCTACTAAACTTTGTGAATACAATAGTAGTTGACATCCGTTCGCCTCCGGCCATGTTTAGAAGAGTGGTGAGTATGTTTGAGGAGTTGAATGACATGATTACCGAGTTGGAATCATTATTTCCTGATCAGGCCGGTGCATCGCTGAGAAACGATGCAATCAAGGCAAAGAGGAGACTAGGTGAGAAAATAAGAGACGTTTTCAAAAACTTGGAGAATCTGATTCACTGTGATTCAGCCATTGCAGATGTTCCAGGAGGCATTGAACCAATCACCCGCGATGTAATGAATGGTCTTGGTGCAATAGTAAGAGTCATGCCTATGATTGAGAAAGCTTTCAAAGAATATCCTATAACAACTTGTCCTTCATTTCCTGCCATGATAGCTTGGATGATAGAGCTGTTGGAGAACCATTTGGAAGCCAAGTACAAAATTTACACTGGAACTTCTTTGGATTATGTGGCCATGATGAATAACATTATGTATATAAAACTAGAGACACTGAAGCATTTTCCCTCTGCTCGATTGATAGACTTCGGCAGAGTCAAACGATATAGTTTCGCTGAAATTTTGGGTGATGATTGGATACAAAAGCACACAAAAAAATTCCAGAAAAACCTTGAAGACTATCAAAGAAGCTCATGGAATGAGGTGCTAGGCTTGTTGAAGCTAGACAACAACAACGAATCACTGGCAAAAGATGTAGCAATTGAGTCCATGAAAGAGAAGTTAGAGTTGTTCAACATTCAATTTGAGGAGATATGTTGCACTCAGTCTAAATGGTTTGGCAGCTATGAAATACGGAAAGAGATAATAGTATCCGTAGAAAACATGTTGTTGCCGGCATATGGAAGCTTCATTGGAAGGCTCCAGGATGTTCTTGGCAAGGCTTCTTATGACTATATACAGTATGGAATGCTTGAAATTAAAGCTCGGCTCAATCGTTTGTTTCTCGGAGGCAAACGGATGAGTCGGTAG 2646 0.4089 MPNYSTHEDQLDALHRCSHLLLLSHDSPFQIGTSTTIQNAENARPCTVEIDAANGVFESGDDNYLNAFQSSYDDGEQQMHDDGYSWRKYEENPLRRGNQTSCYRCAHPNCKVKKKVERTIDGEIIHVNYKGTHAHCRKPRFTIKRNSSSESFYSYLSSKPFHTDMIDQSLLAFNGNGQLDHGADEDHSSGHLVENPLESVIAVIVCVLGLLCYALSSSFNSLFGKWNLLKTFLYCVFSFIICTAVLFVKVSHGPGSLRLKTHLAFLVLMITSFYSFYFDKAVNGKPDAYSIASCAAFAVMFLGLSRHSHCGFEVDLLYFFLAALTIQLMRIKWVFGILGACYSYALIMIHSCVDAQQEINGYHGVPEEPHVIQVDPPELLLNSSITQDSAITEVDSHWQEVNNDFALIKPGLLSSLKALKKQNRKLLGLLYGQSLMEPFHLDDNLLIDMLPCEIINNINETFKMALAAGYEKECCHLYSNCRREFLQQFLSELELKHTPEDHNVFITHNILSWNRTFKIAFRVLFLYERRLCDRIFLGFSSVGDLSFVLACKELTTHLLNFVNTIVVDIRSPPAMFRRVVSMFEELNDMITELESLFPDQAGASLRNDAIKAKRRLGEKIRDVFKNLENLIHCDSAIADVPGGIEPITRDVMNGLGAIVRVMPMIEKAFKEYPITTCPSFPAMIAWMIELLENHLEAKYKIYTGTSLDYVAMMNNIMYIKLETLKHFPSARLIDFGRVKRYSFAEILGDDWIQKHTKKFQKNLEDYQRSSWNEVLGLLKLDNNNESLAKDVAIESMKEKLELFNIQFEEICCTQSKWFGSYEIRKEIIVSVENMLLPAYGSFIGRLQDVLGKASYDYIQYGMLEIKARLNRLFLGGKRMSR* 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0800 881 Gene3D Exocyst complex component Exo70 383 880 - -
Amo17g0800 881 Gene3D WRKY domain 67 139 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo17g0800 881 PANTHER PROTEIN, PUTATIVE-RELATED 199 875 - -
Amo17g0800 881 ProSiteProfiles WRKY domain profile. 75 135 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo17g0800 881 SUPERFAMILY WRKY DNA-binding domain 77 136 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo17g0800 881 Pfam Exo70 exocyst complex subunit 512 870 IPR046364 GO:0000145|GO:0005546|GO:0006887
Amo17g0800 881 Pfam WRKY DNA -binding domain 81 135 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo17g0800 881 SUPERFAMILY Cullin repeat-like 413 873 IPR016159 -
Amo17g0800 881 PANTHER EXOCYST COMPLEX PROTEIN EXO70 199 875 IPR004140 GO:0000145|GO:0006887
Amo17g0800 881 SMART WRKY_cls 80 137 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0800 Amo-Chr17 18900328 18904295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0800 442 875 EXO70 exocyst subunit family AT5G58430 43.274 3.03e-103 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo17g0800 Exo70 9e-68 CL0295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0800 - - aip:107607041 730.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0800 17 18900328 18904295 Amo07g1049 07 19675085 19676072 hybridization