Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0778 ATGGCATCTTCTTCTGGTACCTTAGACACTACTTCTGCTTCCAATTCTTATACCAATAACTTCACTTTCTCAACACACCCATTCATGACCACTTCTTTCTCTGAACTCTTAGCTTCTTCCGCTGAAGACAAGCCTCGTGCTTCTGCTTCTGCTGTTGGTGTTCCTAAGTTCAAGTCTACACCACCACCATCTTTGCCTCTCTCTCCACCACCCATTTCTCCTTCTTCTTACTTCGCTATTCCTCCTGGTTTGAGCCCTGCTGAACTTCTTGATTCCCCTGTTCTTCTTAATCCTTCTAACATTTTGCCATCTCCAACAACGGGGGCATTTGTTGCACATAACTACAATAATTGGAAGAACAACAACAACAATTCTGGTGGGAACCAACAACAAGTTATCATCAAAGAGGAAGAAGGAAAGAACCACAATTTCTCAAACTTCTCTTTCCAAACCCAGCCATCTATGTTTCAATCCTCATCAACTGCCACAACTAAAACACAGCAGCCATGGGGATTTCAAGAATCCAACAAGAAACAGGAAAATTTCTCATCATCAAACACTGTGATGAAAACTGAGAACACTTGTTCCAACCAAAACAACAATGGGTTCCAATCAGATTACAACAGCAACAACAATTACCAGCCACAATCTCAGACTCTAAGCAGAAGATCAGATGATGGTTACAATTGGAGAAAATATGGTCAGAAACAAGTGAAAGGTAGTGAGAATCCAAGAAGTTACTATAAATGCACATTCCCAAATTGCCCAACAAAGAAGAAAGTTGAGAGATCCTTGGATGGACAAATCACAGAGATTGTTTATAAGGGTACTCATAATCACCCTAAGCCTCAGAATACTAGGAGAAACTCTTCATCTTCTTCTAATTCTGCTGCGTTTGCAATTGCTCCCTCCAATCAAATGAACAACTCTGAGGTGACTGATCATCAATCTTATACACATGGTAGTGGACAAATGGATTCTGTTGCCACCCCTGAGAACTCCTCAATTTCAGTTGGGGATGATGATTTTGAACAAAGCTCTCAGAGGTGTAAATCAGGTGGAGATGATTATGATGATGATGAACCTGATGCCAAAAGATGGAAAATTGAAGGGGAAAATGAGGGAATATCAGGAGGTGGAAGTAGAACAGTGAGAGAACCAAGGGTTGTGGTTCAGACAACAAGTGACATAGATATCCTTGATGATGGCTACAGATGGAGGAAGTATGGCCAGAAAGTAGTTAAGGGCAATCCAAATCCAAGGAGTTACTACAAGTGCACACACCCAGGTTGTCCAGTGAGGAAGCATGTAGAGAGAGCCTCACATGACCTGAGGGCAGTGATAACAACCTATGAAGGCAAACACAACCATGATGTCCCCGCTGCCCGCGGCAGCGGAAGCCATGCCTCTGTCAACAGACCAATGCCAAACAACCACCACAACAATGCAAGCATTGCAATTAGGCCTTTACCATCAATGACACACCACAACAACAACAACACTAACAACACTACTTCCCTTCAACAAGGGCCAGAAGGACAATCACCCTTCACACTTGAAATGCTTCAGAACCCTTCAAGCTATGGATTCTCATCTTCTGGGTTTGGGAATCCAATGGGTTCTTACATGCCTCAGCAGCAACAACAACAACAGCAATCTGACAATGTGTTTTCTTCCAGAGCCAAGGAGGAACCTAGGGATGACATGTTCCTTGAATCTCTGCTATGCTGA 1731 0.4292 MASSSGTLDTTSASNSYTNNFTFSTHPFMTTSFSELLASSAEDKPRASASAVGVPKFKSTPPPSLPLSPPPISPSSYFAIPPGLSPAELLDSPVLLNPSNILPSPTTGAFVAHNYNNWKNNNNNSGGNQQQVIIKEEEGKNHNFSNFSFQTQPSMFQSSSTATTKTQQPWGFQESNKKQENFSSSNTVMKTENTCSNQNNNGFQSDYNSNNNYQPQSQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLDGQITEIVYKGTHNHPKPQNTRRNSSSSSNSAAFAIAPSNQMNNSEVTDHQSYTHGSGQMDSVATPENSSISVGDDDFEQSSQRCKSGGDDYDDDEPDAKRWKIEGENEGISGGGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSHASVNRPMPNNHHNNASIAIRPLPSMTHHNNNNTNNTTSLQQGPEGQSPFTLEMLQNPSSYGFSSSGFGNPMGSYMPQQQQQQQQSDNVFSSRAKEEPRDDMFLESLLC* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0778 576 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 41 549 IPR044810 GO:0003700
Amo17g0778 576 SMART WRKY_cls 224 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo17g0778 576 SMART WRKY_cls 400 459 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo17g0778 576 ProSiteProfiles WRKY domain profile. 395 460 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo17g0778 576 MobiDBLite consensus disorder prediction 279 343 - -
Amo17g0778 576 MobiDBLite consensus disorder prediction 154 228 - -
Amo17g0778 576 SUPERFAMILY WRKY DNA-binding domain 392 460 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo17g0778 576 MobiDBLite consensus disorder prediction 470 558 - -
Amo17g0778 576 MobiDBLite consensus disorder prediction 274 363 - -
Amo17g0778 576 MobiDBLite consensus disorder prediction 455 576 - -
Amo17g0778 576 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 41 549 - -
Amo17g0778 576 MobiDBLite consensus disorder prediction 154 224 - -
Amo17g0778 576 MobiDBLite consensus disorder prediction 344 363 - -
Amo17g0778 576 Pfam WRKY DNA -binding domain 401 457 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo17g0778 576 Pfam WRKY DNA -binding domain 225 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo17g0778 576 SUPERFAMILY WRKY DNA-binding domain 223 283 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo17g0778 576 Gene3D WRKY domain 209 284 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo17g0778 576 ProSiteProfiles WRKY domain profile. 225 283 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo17g0778 576 Gene3D WRKY domain 387 453 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0778 Amo-Chr17 18326373 18329629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0778 47 575 WRKY Transcription Factor Family AT2G38470 48.066 3.43e-120 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo17g0778 WRKY 1.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0778 K13424 - gmx:100127393 762.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0778 17 18326373 18329629 Amo17g0778 17 18326373 18329629 ECH
Amo17g0778 17 18326373 18329629 Amo07g1079 07 20564758 20569198 hybridization