Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0713 ATGGACCCTGCAGCCGGAATGGTCGATAAGGCTGTGGCTGTTCTAGCAAATCTGGCCACAATACCGGAAGGAAGAACTGCCATTGGGCAGCAAGGTGGCATTCCTCTTCTGGTTGAGGTTGTTGAGTTGGGTTCTACTAGAGGAAAGGAGAATGCAGCAGCAGCTCTTCTACATTTATGCGTAAACCATCCGAGATATTTAAACATGGTACTCCAAGAAGGAGCTGTTCCACCATTAGTCGCTTTATCAAGATCAGGCACCGCAAGGGCTAAAGAGAAGGCCCTGTCTCTTCTGAATCATTTTAGAGATCGAAGGCATGGTGGTGCTGTGAGGGGCTGA 339 0.4897 MDPAAGMVDKAVAVLANLATIPEGRTAIGQQGGIPLLVEVVELGSTRGKENAAAALLHLCVNHPRYLNMVLQEGAVPPLVALSRSGTARAKEKALSLLNHFRDRRHGGAVRG* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0713 112 SUPERFAMILY ARM repeat 8 104 IPR016024 -
Amo17g0713 112 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 108 - -
Amo17g0713 112 PANTHER U BOX DOMAIN-CONTAINING 1 108 - -
Amo17g0713 112 Pfam Armadillo/beta-catenin-like repeat 22 60 IPR000225 GO:0005515
Amo17g0713 112 Gene3D - 2 106 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0713 Amo-Chr17 16455701 16456134 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0713 9 98 U-box Gene Family AT2G23140 38.889 7.81e-10 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0713 - - adu:107458158 220.705