Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0712 ATGGACATATCTTTGTTAAATGTGCTCTCCAATGGCATATCCTCATTTTTGCATCCATCATTTTCTGGAAACATGAACTCAAAACCTGTATCAATGTATTGCCAAAGTGCAGAGCAGACACTTAAGTTGTTGAAGCCAATTATCGACACAACTGTTCATTCTGATATATCTGCTGATGAAGAGCTTAGAAAGTTATTTGAGGAACTTGGTCAGTCTGTTGATGAGTTGAGGGAGCTTTTCGAGAATTGGCATCCGCTATCCAGTAAATTTTACTTTGTGATGCAAGCTGAACCGTTGATAGCTAGAATTCAGTCTATAGGGTTCAATATTTTGCAGAAGCTGAAGGCTTCACAGCAATGTCTACCTGATGATTTGGGGCATGATATGACATCAATCATTAAGGAAGCTATAAATGAACAACCGGAAGGCGAAGGACCAAGTTCTGAGATTCTAGCAAATATTGCCGAGATCCTCGACTTAAGGTCTAATCAAGATGTTTTGATTGAAGCTGTGGCCCTTGAAAGGTTGAAGGAGAATGCTGAACAAACTGAAAACATTGCAGAAGCTGAGTATATTGATCGAATGATCTCTGTTGTGACTCGAATGCATGAGCGAATCATCATTCTCAAGCAAGCTCAGAGCTCTATCCCGGATTCGGTACCTGCTGATTTTTGCTGTCCTCTCTCTTTGGAATTGATGACAGATCCAGTCATTGTGTCATCCGGGCAAACCTATGAGCGAACTTTCATCAAGGACTGGATTGATCTTGGGCTCATGGTTTGTCCAAAGACTCGTCAGACTCTGGTTCATTCCAACCTAATACCTAACTACACTGTAAAAGCATTAATTGTTAATTGGTGCGAAACAAACAATGTGATACTAGTTGATCCAGTAAAGTCCACAAACATAAATCAACTGTCTCTCCTTCATGGATCTATTGAGTCTGGTACAATCAAGGAATCAACTGTTAGAACTTCTTTCAGTGCAAACCATCAAGAGGAAACATCACCATTCCATCCTAGTTCAACTCCAGAAGATTCCTTTAGTGGCGTGGATAATGCACAGCATGTGGATCCTGTAAGAATATCATCTGCAGTTTCAGATGACAGGTCTGCTAGCTCGGACGAAGAAAGTGTGGATTTAGTTTCACAATCATCAACTTCACCATCTAGAAGGGAAGCTTCAAATGCCTTGAGATCAGAGCAATCTCAAAACCATGTAAGAACTTATTCTGATTCCAGTGAACACTCTAGTGAAAATTTTCATCAAGGCATACAGGGTGATAGCAACAATGGTCCTCTTCCATCATCAACCAGTCCAATCCACAGTCGAGATGCTTCTGAGGAATTAGCTCCCGAGCTGGATGCTGCTGCCAGGCCAATTCCACAAGGCGAGCCCGAGTTTTCACCACAACTTGTGCAGCCAAGGTTTCCAAGAAAAACTGTATTACAACGGCCGTCAGAGAGGTTTGTCCCTAGGATAGTTTCTTCTCCTCCTGTTGAACCAAGAGGCGATGGATCCGTTATTGAATCCAGGGTTAAGGAGTTGATTGAGCTCTTGAAGAGCTCTTCTCTTGATACTCAAAGGGAAGCCACAGGAGAACTCCGCCTTCTTGCCAAGCACAACATGGATAACAGAATTGTGATTGCAAACTGTGGAGCCATTCCCTTGTTGGTCAATTTGCTTCTATCAACCGATACAACAATCCAAGAAAACTCTGTTACAGCACTTCTTAACTTATCAATCAATGACAACAACAAAAATGCAATTGCAAATGCTGGTGCAATTGAACCTCTGATTCATGTCCTTGAGACAGGTAGTGAAGAAGCAAAGGAGAACTCGGCGGCTACTCTTTACAGCTTATCAGTGGTTGAGGAGAACAAGATCAGGATAGGGAGGGCCGGGGCTATTAAACCTCTGGTTGAGTTATTAAGTAATGGAACTCCAAGGGGTAAGAAAGATGCTTCCACTGCTTTATTTAACACGAAAACAAGGATCGAATTGTAG 2007 0.4205 MDISLLNVLSNGISSFLHPSFSGNMNSKPVSMYCQSAEQTLKLLKPIIDTTVHSDISADEELRKLFEELGQSVDELRELFENWHPLSSKFYFVMQAEPLIARIQSIGFNILQKLKASQQCLPDDLGHDMTSIIKEAINEQPEGEGPSSEILANIAEILDLRSNQDVLIEAVALERLKENAEQTENIAEAEYIDRMISVVTRMHERIIILKQAQSSIPDSVPADFCCPLSLELMTDPVIVSSGQTYERTFIKDWIDLGLMVCPKTRQTLVHSNLIPNYTVKALIVNWCETNNVILVDPVKSTNINQLSLLHGSIESGTIKESTVRTSFSANHQEETSPFHPSSTPEDSFSGVDNAQHVDPVRISSAVSDDRSASSDEESVDLVSQSSTSPSRREASNALRSEQSQNHVRTYSDSSEHSSENFHQGIQGDSNNGPLPSSTSPIHSRDASEELAPELDAAARPIPQGEPEFSPQLVQPRFPRKTVLQRPSERFVPRIVSSPPVEPRGDGSVIESRVKELIELLKSSSLDTQREATGELRLLAKHNMDNRIVIANCGAIPLLVNLLLSTDTTIQENSVTALLNLSINDNNKNAIANAGAIEPLIHVLETGSEEAKENSAATLYSLSVVEENKIRIGRAGAIKPLVELLSNGTPRGKKDASTALFNTKTRIEL* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0712 668 MobiDBLite consensus disorder prediction 323 350 - -
Amo17g0712 668 Pfam U-box domain 220 290 IPR003613 GO:0004842|GO:0016567
Amo17g0712 668 MobiDBLite consensus disorder prediction 377 444 - -
Amo17g0712 668 SUPERFAMILY ARM repeat 507 661 IPR016024 -
Amo17g0712 668 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 332 - -
Amo17g0712 668 Pfam Armadillo/beta-catenin-like repeat 583 622 IPR000225 GO:0005515
Amo17g0712 668 Pfam Armadillo/beta-catenin-like repeat 544 581 IPR000225 GO:0005515
Amo17g0712 668 Pfam Armadillo/beta-catenin-like repeat 626 661 IPR000225 GO:0005515
Amo17g0712 668 SMART Ubox_2 223 286 IPR003613 GO:0004842|GO:0016567
Amo17g0712 668 ProSiteProfiles U-box domain profile. 219 293 IPR003613 GO:0004842|GO:0016567
Amo17g0712 668 Coils Coil 163 193 - -
Amo17g0712 668 MobiDBLite consensus disorder prediction 323 485 - -
Amo17g0712 668 Gene3D - 510 587 IPR011989 -
Amo17g0712 668 PANTHER U BOX DOMAIN-CONTAINING 8 332 - -
Amo17g0712 668 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 455 663 - -
Amo17g0712 668 SMART arm_5 501 540 IPR000225 GO:0005515
Amo17g0712 668 SMART arm_5 583 623 IPR000225 GO:0005515
Amo17g0712 668 SMART arm_5 624 664 IPR000225 GO:0005515
Amo17g0712 668 SMART arm_5 542 582 IPR000225 GO:0005515
Amo17g0712 668 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 295 IPR013083 -
Amo17g0712 668 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 594 636 IPR000225 GO:0005515
Amo17g0712 668 PANTHER U BOX DOMAIN-CONTAINING 455 663 - -
Amo17g0712 668 CDD RING-Ubox_PUB 224 266 IPR045210 -
Amo17g0712 668 Gene3D - 588 664 IPR011989 -
Amo17g0712 668 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 511 553 IPR000225 GO:0005515
Amo17g0712 668 SUPERFAMILY RING/U-box 210 297 - -
Amo17g0712 668 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 553 595 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0712 Amo-Chr17 16452403 16455668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0712 544 664 U-box Gene Family AT2G23140 35.537 4.94e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0712 - - adu:107458158 1225.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0712 17 16452403 16455668 Amo07g0865 07 15695780 15700001 hybridization
Amo11g0096 11 1231055 1238052 Amo17g0712 17 16452403 16455668 PCT
Amo17g0712 17 16452403 16455668 Amo11g0096 11 1231055 1238052 PCT