Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0709 ATGTTTGGATGTCCTGAGACAGAAAGAATAGATGAGATAGCAAAGAAGGTGAAGATAGAGGGAGAATTATTAACATCAAGTTGTAGTGAAAGTGAAATAGAAATAATGGGGAGGAAGCAAAGCTTAAACACAGTGACACCATGTGCTGCTTGCAAGCTTCTTAGAAGAAGGTGTGCTGAGGAGTGTCCCTTCTCTCCTTATTTCTCACCACATGAGCCTCAAAAGTTTGCTGCTGTTCATAAAGTCTTTGGTGCAAGCAATGTCTCCAAGATGCTCATGGAAGTAGGAGAGGGACAAAGAGCAGATGCAGCAAACAGTTTGGTATATGAAGCAAACTTGAGATTAAGAGATCCAGTTTATGGATGCATGGGTGCAATTTCAGGTTTGCAGCAACAAATTCAAACATTGCAAGCTGAAGTCAATGCTGTTAGGGCTGAGATTCTCAAATACAAATATAGAGAAGCTGCTGCCACTGCCACTGCCACTCTCATTTCCATGAATCATCATCATCATCACCATCTTCCATCTAATAATCAAGCACCAATAATAATCAATAATAATAATAATGATAATAATGCTGCAAACTCTTCATCACAACAACAAGGTATTTCTCAACCTCCTCTTCCTCCACCTTTGCGCCCTGTGCCGCCAAATCCATCTTTACCTTCACCTTCTACTGTTGTGCTTTCGTCGTCTTTGTCTTCGTCTTCGGCTTCTTCTGTTTACAACAACACTCCACCTAAAACCACATTGAGTCATGGATCCATTACTAGTGAAAGTGTTCCTTACTTTGCTTAA 798 0.406 MFGCPETERIDEIAKKVKIEGELLTSSCSESEIEIMGRKQSLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVGEGQRADAANSLVYEANLRLRDPVYGCMGAISGLQQQIQTLQAEVNAVRAEILKYKYREAAATATATLISMNHHHHHHLPSNNQAPIIINNNNNDNNAANSSSQQQGISQPPLPPPLRPVPPNPSLPSPSTVVLSSSLSSSSASSVYNNTPPKTTLSHGSITSESVPYFA* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0709 265 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 34 264 - -
Amo17g0709 265 MobiDBLite consensus disorder prediction 224 259 - -
Amo17g0709 265 MobiDBLite consensus disorder prediction 204 223 - -
Amo17g0709 265 Pfam Lateral organ boundaries (LOB) domain 47 143 IPR004883 -
Amo17g0709 265 ProSiteProfiles LOB domain profile. 46 147 IPR004883 -
Amo17g0709 265 MobiDBLite consensus disorder prediction 178 203 - -
Amo17g0709 265 PANTHER LOB DOMAIN PROTEIN 34 264 - -
Amo17g0709 265 Coils Coil 126 153 - -
Amo17g0709 265 MobiDBLite consensus disorder prediction 169 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0709 Amo-Chr17 16364491 16366418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0709 12 155 AS2 family AT2G30340 68.421 6.10e-71 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo17g0709 LOB 2.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0709 - - adu:107458169 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0709 17 16364491 16366418 Amo17g0709 17 16364491 16366418 ECH
Amo17g0709 17 16364491 16366418 Amo07g0868 07 15771386 15773334 hybridization