Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0704 ATGGAGAGTCTGCGGCAAATATGGTGTCAACAGCACCGCTCTCTTTCTCAGCTTCTTTTCCTCCGATCAATTTCTTCCAAGATTTTTGTCAAAGGATTAGCATTTTCTACCACGAAAGAGAAATTAGCTGAAGCCTTTTCAGAATATGGCAATGTCCTAAATGCTGATATAGTACTGAACAAAGCCAAAAACAGATCTAAGGGTTTCGGATACGTGACCTTTGCTAAGGAGGAAGAAGCCCGCAAGGCACAGATGGCCATGAATGGAAATATATTGCATGGGCGTGTTCTGTATGTGGATATGGAACCACATAAGAAACCAGAAAAATCATCTTTTGACAAGGCAACTGCTGATGGTTGA 360 0.4167 MESLRQIWCQQHRSLSQLLFLRSISSKIFVKGLAFSTTKEKLAEAFSEYGNVLNADIVLNKAKNRSKGFGYVTFAKEEEARKAQMAMNGNILHGRVLYVDMEPHKKPEKSSFDKATADG* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0704 119 Gene3D - 15 114 IPR012677 -
Amo17g0704 119 PANTHER RNA RECOGNITION MOTIF 15 103 - -
Amo17g0704 119 SMART rrm1_1 27 100 IPR000504 GO:0003723
Amo17g0704 119 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Amo17g0704 119 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 104 IPR000504 GO:0003723
Amo17g0704 119 SUPERFAMILY RNA-binding domain, RBD 26 107 IPR035979 GO:0003676
Amo17g0704 119 PANTHER TRANSFORMER-2-RELATED 15 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0704 Amo-Chr17 16233457 16235554 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0704 20 99 Eukaryotic Initiation Factors Gene Family AT1G22760 40.000 1.31e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0704 - K13195 gmx:100527061 142.124