Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0691 ATGGCACTTTTTACTACTACACTTCTAGTTGCTCTCATTGGTTTACTTATTGGTATCAATCTTCAAGGTGCCATTGCTGACTATGGTGGTAGTTGGCAGGGTGGACATGCCACTTTCTATGGTGGTGGTGATGCTTCCGGCACAATGGGAGGAGCATGTGGTTATGGAAATTTGTATAGCCAAGGATATGGAACCAACACTGCAGCACTAAGCACAGCATTGTTCAACAATGGATTGAGCTGTGGTGCTTGCTATGAGATGAGGTGTGATGATGATCCAAGATGGTGCAAACCTGCCACCATTATTGTCACTGCTACAAACTTTTGTCCCCCAAATTTTGCTTTGGCTAACAACAATGGTGGATGGTGCAACCCTCCCCTTCAACACTTTGACATGGCTGAACCTGCATTCCTTCAAATTGCTGAGTATAGAGCTGGAATTGTGCCTGTTGCATTTAGAAGAGTGCCTTGTATGAAAAAGGGAGGAATAAGGTTCACCATCAATGGGCATTCATACTTCAACCTAGTTTTGATCACAAACGTCGCGGGTGCAGGGGACATCCATGCAGTCTCAATCAAAGGGTCAAGAACTGGCTGGCAAACAATGTCAAGGAACTGGGGGCAAAATTGGCAAAGCAACTCATACCTTAATGGACAGAGCCTCTCTTTTCAAGTCACCGCCAGTGACGGTAGAACCGTCACAAGCTTCAACGTGGCACCAGCTAACTGGCAGTTTGGTCAAACTTTCCAAGGTGCTCAGTTTTAA 765 0.4562 MALFTTTLLVALIGLLIGINLQGAIADYGGSWQGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEMRCDDDPRWCKPATIIVTATNFCPPNFALANNNGGWCNPPLQHFDMAEPAFLQIAEYRAGIVPVAFRRVPCMKKGGIRFTINGHSYFNLVLITNVAGAGDIHAVSIKGSRTGWQTMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSFNVAPANWQFGQTFQGAQF* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0691 254 Gene3D - 162 254 IPR036749 -
Amo17g0691 254 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Amo17g0691 254 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Amo17g0691 254 Gene3D - 20 158 IPR036908 -
Amo17g0691 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Amo17g0691 254 SUPERFAMILY Barwin-like endoglucanases 31 180 IPR036908 -
Amo17g0691 254 SMART dpbb_1 67 152 IPR007112 -
Amo17g0691 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 162 IPR007112 -
Amo17g0691 254 PANTHER EXPANSIN-A15 10 254 IPR002963 GO:0009664
Amo17g0691 254 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Amo17g0691 254 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Amo17g0691 254 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Amo17g0691 254 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Amo17g0691 254 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Amo17g0691 254 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Amo17g0691 254 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Amo17g0691 254 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Amo17g0691 254 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Amo17g0691 254 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Amo17g0691 254 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Amo17g0691 254 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Amo17g0691 254 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Amo17g0691 254 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Amo17g0691 254 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Amo17g0691 254 Pfam Lytic transglycolase 67 151 IPR009009 -
Amo17g0691 254 PANTHER EXPANSIN 10 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0691 Amo-Chr17 15615916 15618389 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0691 8 254 Expansin Gene Family AT2G40610 80.242 2.87e-149 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0691 - - gmx:100816848 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0691 17 15615916 15618389 Amo17g0691 17 15615916 15618389 ECH