Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0689 ATGCAAGATCCACCACCAACACCACCACCTCCAAACTCCGCTTCCCACTTACCTCCACCGGCCCCCTCCACCGCCGCAACTTCCTCAGCCTCCTCACTCTTCGTTCGCTCCGCCGCCAATGGCCACCGCCGAGCTCACTCCGAAGTCAGTTTCCGCTTACCTGACGACATGATGGACCTCTCGCCGTCGGATCCGTTCACCGGCGGCTCCTCCACGGCCAGCCTCGACGAGATCGGATCGGAGGATGACCTGTTCACGACGTACATTGACGTGGACAAGCTCGGGAATGGCTCGGGCGGATCCGGAAACGGATCGGATCCGATTGGGAACGGTACAGAATCGGAGAAGGCGGTTCCGAGGCCGAGGCACAGGCACAGTAACTCTGTGGATGGTTCTACGACGTCGTTTGGGGAGATCATGGACGCTAAGAAAGCTATGCCTCCTGATAAGCTCGCTGAGCTTTGGACCATTGATCCCAAGCGTGCTAAGAGGATACTTGCAAATAGGCAATCTGCTGCTCGATCAAAAGAGAGAAAGGCTCGCTACATTCAAGAACTTGAGCGCAAAGTTCAGACTCTTCAAACTGAAGCCACAACCCTTTCTGCCCAGCTGACACTATACCAGAGGGACACAAATGGTCTGAGTACTGAAAACACAGAGCTTAAGCTCCGCCTGCAAGCCATGGAGCAACAAGCACAACTTCGTGATGCTTTAAATGAGGCACTGAAGAAAGAAGTCGAGAGGCTTAAGGTTGCCACTGGCGAAATGATGAGCCCCACCGAGTCTTTTAACCTTGGAATGCACCAGATGCCATTCACAGGAGCAAATTTCTTTCCGATCCCACCCCAATCAGGTCCTTCTGATCACCAGAACATGCAGTTGCCACCATTTGCTCACGCCCCACCTGGCATGCCAACGCATCAACTACAACAATCGAGTTCTCATCCACTCTCGGAAATAATGCAAAATCATATGCAGGGACTCGACATCAACAGCAAAGGACCAACTACGGTGAAGTCCGAAGGCCCATCAATTTCTGCAAGTGAGAGTAGCACTACATTCTGA 1065 0.5305 MQDPPPTPPPPNSASHLPPPAPSTAATSSASSLFVRSAANGHRRAHSEVSFRLPDDMMDLSPSDPFTGGSSTASLDEIGSEDDLFTTYIDVDKLGNGSGGSGNGSDPIGNGTESEKAVPRPRHRHSNSVDGSTTSFGEIMDAKKAMPPDKLAELWTIDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTNGLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEMMSPTESFNLGMHQMPFTGANFFPIPPQSGPSDHQNMQLPPFAHAPPGMPTHQLQQSSSHPLSEIMQNHMQGLDINSKGPTTVKSEGPSISASESSTTF* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0689 354 Gene3D - 159 212 - -
Amo17g0689 354 CDD bZIP_plant_RF2 161 210 IPR044759 GO:0003700|GO:0006355
Amo17g0689 354 PANTHER ATBZIP TRANSCRIPTION FACTOR 15 351 - -
Amo17g0689 354 MobiDBLite consensus disorder prediction 1 18 - -
Amo17g0689 354 SMART brlzneu 156 220 IPR004827 GO:0003700|GO:0006355
Amo17g0689 354 Coils Coil 211 255 - -
Amo17g0689 354 MobiDBLite consensus disorder prediction 1 78 - -
Amo17g0689 354 MobiDBLite consensus disorder prediction 95 136 - -
Amo17g0689 354 SUPERFAMILY Leucine zipper domain 160 211 IPR046347 GO:0003700|GO:0006355
Amo17g0689 354 Pfam bZIP transcription factor 160 217 IPR004827 GO:0003700|GO:0006355
Amo17g0689 354 Coils Coil 176 203 - -
Amo17g0689 354 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 158 221 IPR004827 GO:0003700|GO:0006355
Amo17g0689 354 MobiDBLite consensus disorder prediction 19 36 - -
Amo17g0689 354 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 15 351 - -
Amo17g0689 354 MobiDBLite consensus disorder prediction 328 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0689 Amo-Chr17 15553547 15556805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0689 1 354 bZIP Transcription Factor Family AT2G40620 52.273 1.01e-98 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo17g0689 bZIP_1 6.2e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0689 - - gmx:778172 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0689 17 15553547 15556805 Amo17g0689 17 15553547 15556805 ECH
Amo11g0088 11 1127212 1129767 Amo17g0689 17 15553547 15556805 PCT
Amo17g0689 17 15553547 15556805 Amo11g0088 11 1127212 1129767 PCT