Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0685 ATGGATCTCCTCCTCCTGGAGAAGACTCTGGTCGGTCTATTCGTAGCTACAATTCTTGCCGTCGTTATCTCCACCCTCCGCGGCCGCAAATTCAAGCTTCCGCCGGGACCCTTTCCTGTTCCCATCTTCGGTAACTGGCTCCAGGTCGGCGATGACCTCAACCACCGCAACCTCACCGATCTCGCCAAGAAATTCGGCGACATCTTCCTCCTCCGCATGGGGCAGCGCAACCTTGTCGTTGTTTCTTCCCCTGATCTCGCCAAGGAGGTTCTCCACACTCAGGGCGTCGAATTCGGTTCCCGCACCCGTAACGTCGTCTTCGACATCTTCACTGGAAAGGGCCAGGATATGGTGTTCACCGTTTACGGTGAGCATTGGAGGAAGATGAGGAGGATCATGACGGTGCCGTTCTTCACGAACAAGGTGGTACAGCAGTACCGTCCCGGTTGGGAAGCCGAGGCGGCGAGCGTGGTGGAGGATGTTAAGAAGAATCCAGAAGCCGCGACGTCCGGGATAGTGCTGAGGAGGAGGCTGCAGCTGATGATGTACAACAACATGTACAGGATAATGTTCGACAGGAGGTTTGAGAATGAAGAGGATCCATTGTTTCAGAAGCTTAAGGCACTTAATGGTGAGAGGAGTAGGCTTGCTCAGAGCTTTGAGTATAACTATGGTGATTTCATTCCTATCTTGAGGCCTTTCTTGAGAGGTTACTTGAAGATCTGCAAGGAGGTTAAGGAAACCAGGTTGAAGCTCTTCAAAGACTTCTTTGTTGATGAGAGGAAGAAGCTTGGAAGCACAAGGAGTTCAGATAACGGGGAACTGAAATGCGCCATCGACCACATTTTGGATGCCCAGAAAAAGGGCGAAATCAACGAAGACAACGTCCTTTACATTGTCGAGAACATTAACGTTGCTGCAATTGAGACAACTTTATGGTCGATTGAATGGGGAATTGCTGAGCTAGTGAACCACCCAGAGATTCAGAAGAATGTTAGGGATGAAATTGACACAGTCCTTGGACCAGGCCACCAAGTAACAGAGCCAGATTTGCAAAAACTCCCTTACCTCCAAGCAGTGATCAAGGAAACCCTCCGTCTCCGCATGGCGATCCCACTCCTCGTCCCACACATGAACCTCCACGACGCCAAGCTCGGTGGCTATGACATCCCGGCAGAGAGCAAGATCTTGGTCAACGCATGGTGGCTCGCAAATAACCCCGCCAACTGGAAGAACCCAGAGGAGTTTAGGCCCGAGAGGTTCCTTGAGGAGGAGAAGCATGTTGAGGCCAACGGCAATGACTTCAGGTATCTTCCCTTTGGTGTTGGAAGAAGGAGCTGCCCTGGAATCATCCTTGCATTGCCAATTCTCGGAATCACTTTGGGGCGTTTGGTCCAAAACTTCGAGCTCTTGCCGCCGCCGGGGCAGAGCAAGTTGGACACTACTGAGAAAGGAGGACAGTTTAGTTTGCACATACTCAAGCATTCCACCATTGTGGCAAAGCCAAGATCATTCTAA 1518 0.5119 MDLLLLEKTLVGLFVATILAVVISTLRGRKFKLPPGPFPVPIFGNWLQVGDDLNHRNLTDLAKKFGDIFLLRMGQRNLVVVSSPDLAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRPGWEAEAASVVEDVKKNPEAATSGIVLRRRLQLMMYNNMYRIMFDRRFENEEDPLFQKLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKETRLKLFKDFFVDERKKLGSTRSSDNGELKCAIDHILDAQKKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKNVRDEIDTVLGPGHQVTEPDLQKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDIPAESKILVNAWWLANNPANWKNPEEFRPERFLEEEKHVEANGNDFRYLPFGVGRRSCPGIILALPILGITLGRLVQNFELLPPPGQSKLDTTEKGGQFSLHILKHSTIVAKPRSF* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0685 505 PRINTS E-class P450 group I signature 447 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo17g0685 505 PRINTS E-class P450 group I signature 295 312 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo17g0685 505 PRINTS E-class P450 group I signature 358 376 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo17g0685 505 PRINTS E-class P450 group I signature 315 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo17g0685 505 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo17g0685 505 PRINTS E-class P450 group I signature 181 199 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo17g0685 505 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo17g0685 505 PRINTS E-class P450 group I signature 399 423 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo17g0685 505 PRINTS E-class P450 group I signature 437 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo17g0685 505 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 1 505 - -
Amo17g0685 505 Gene3D Cytochrome P450 27 504 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo17g0685 505 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 440 449 IPR017972 GO:0005506|GO:0016705
Amo17g0685 505 PRINTS P450 superfamily signature 306 323 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo17g0685 505 PRINTS P450 superfamily signature 359 370 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo17g0685 505 PRINTS P450 superfamily signature 438 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo17g0685 505 SUPERFAMILY Cytochrome P450 34 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo17g0685 505 Pfam Cytochrome P450 34 495 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo17g0685 505 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 1 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0685 Amo-Chr17 15407336 15411995 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0685 1 504 Monolignol Biosynthesis Gene Families AT2G30490 85.516 0.0 885
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0685 K00487 - gmx:100818985 935.636
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0685 17 15407336 15411995 Amo17g0685 17 15407336 15411995 ECH
Amo11g0058 11 816640 824223 Amo17g0685 17 15407336 15411995 PCT
Amo17g0685 17 15407336 15411995 Amo11g0058 11 816640 824223 PCT