Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0667 ATGCACTTACATGGTGCTTCTTTTCTTTCTAATGCCAAACCAAACAAAGTCAAAAATATTGTCGTCTTTTCCATTAGCACCAAAATCATGATCGTTAAGAAACCCCTTTTAACCGGAAGCTGTCAATGCTACCAATGCCACCGACGCAGATCTGAACACCATCACATTTTTGATTCCCTCTTTTCCCTCTTCATAACCCCAACCCCAACCGTCCTTCCATCTTTTGTCGTTGTTGTGAGTTCCCACCTTTCACTGGAGGCTCTTTACTCTTCATTGCAAGCAAAAGCAAACGCCTCTTCCTTCTCCTCCTTGTCACCGTATCACCAGCAAATGGCAAAGGGTTGCACAAACAACGATTATGAGGAGGCTAGGAAACAAAGGCTAGAAGAAAACAAGAAGCGGTTTGAGGATTTGGGAATTTCAACAATTTCAAAGAATTTGTCTGAAATTGCGAGTTCTGTTAAGAAGTCTCCGTATCGTTCTCCTAAACCGAAATCAAAGAGGGATGTTGTAGTGGAACCAAGGCGTTCTTCTCGTGTACGGAACCCAGTTCGTACATACCGTGAAGATGGTGACATAGAACTTCCAACTTTTCGGAAAAGGTCAAGGTCAAGTTCATCATGGGGAAGTTATATTGCAAGGCCACTAGATGAAATCAAGGAAGCTACAGTTGAACAAAGAGCTCGAGCTTTGGAGGCTGCGGAAAAACTCCAAAGCAATTTGCAGTCTGAGAATCCATCATTTATTAAGTCAATGGTCCGGTCTCATGTTTATAGCTGCTTTTGGTTGGGTCTTCCTTTGAGATTTTGTGCAAAACATCTCCCAAAAACTGTATGTAACATGATTTTAGAGGATGAAACTGGTAAAGAATTTGAGGCTGTTTTCATTGGCAATAGAAGTGGACTTAGTGGTGGCTGGAGAGGATTTGCATTGGAGCATAAGTTGGATGATGGTGATGCACTTGTTTTTGAATTGACTGAAAAAACAAGATTTAAGATTTATAGAATTAAAGCATTTCCAGATTCAGCTGAAGAATATGAAAAACAGATTTTGAAGGAAGAAGGAAACAAACGTGCAAAGAAAGCACTGAAAGCTAATAGTAACTCCGAATCAGAATTTGACAAGACAAAAAACCCAAAAAAAGCCATTGCAGATAAAACTAATGAAGTAGAGAGTTCTAAGGATAACCTGCCAGAACGTAACATTGATACTGAAGTTAAACCACAGGAGGTGAAGCTAAGTTATAGAACTAGGTTTACTCGGAAGAAAGTGCAAGATAAATCTAAAGGGGGAACACAAGTTGAAAATGGAGAATCAAAGGAGGCCATGAAGCCTAAATCTCAAGGAAACAAGACAAAAAAGTCAAAAGAAAGTGTTGATCATAAAATCGATAACTCGGACAATACTCAACAGGTTCTTTCCAAAAATAACCCTGTCGGACCAAAAGGTGCGAGCCTAAGCAATGAAGATGGGATTGTTCAGGATGGTGGACCAGTTGAAGAAAACAGCAAAAGTGTTTCAAAACCTAGAAAAATGCGAGCTCCAAAGCTTTTCAGAAAGAGAGTATAG 1569 0.399 MHLHGASFLSNAKPNKVKNIVVFSISTKIMIVKKPLLTGSCQCYQCHRRRSEHHHIFDSLFSLFITPTPTVLPSFVVVVSSHLSLEALYSSLQAKANASSFSSLSPYHQQMAKGCTNNDYEEARKQRLEENKKRFEDLGISTISKNLSEIASSVKKSPYRSPKPKSKRDVVVEPRRSSRVRNPVRTYREDGDIELPTFRKRSRSSSSWGSYIARPLDEIKEATVEQRARALEAAEKLQSNLQSENPSFIKSMVRSHVYSCFWLGLPLRFCAKHLPKTVCNMILEDETGKEFEAVFIGNRSGLSGGWRGFALEHKLDDGDALVFELTEKTRFKIYRIKAFPDSAEEYEKQILKEEGNKRAKKALKANSNSESEFDKTKNPKKAIADKTNEVESSKDNLPERNIDTEVKPQEVKLSYRTRFTRKKVQDKSKGGTQVENGESKEAMKPKSQGNKTKKSKESVDHKIDNSDNTQQVLSKNNPVGPKGASLSNEDGIVQDGGPVEENSKSVSKPRKMRAPKLFRKRV* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0667 522 MobiDBLite consensus disorder prediction 361 522 - -
Amo17g0667 522 MobiDBLite consensus disorder prediction 465 483 - -
Amo17g0667 522 Coils Coil 118 138 - -
Amo17g0667 522 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS05G0481400 113 352 - -
Amo17g0667 522 MobiDBLite consensus disorder prediction 153 180 - -
Amo17g0667 522 Pfam B3 DNA binding domain 248 332 IPR003340 GO:0003677
Amo17g0667 522 SUPERFAMILY DNA-binding pseudobarrel domain 241 336 IPR015300 -
Amo17g0667 522 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 113 352 IPR044837 -
Amo17g0667 522 ProSiteProfiles B3 DNA-binding domain profile. 248 339 IPR003340 GO:0003677
Amo17g0667 522 Coils Coil 220 240 - -
Amo17g0667 522 CDD B3_DNA 246 334 IPR003340 GO:0003677
Amo17g0667 522 MobiDBLite consensus disorder prediction 439 464 - -
Amo17g0667 522 Gene3D - 222 339 IPR015300 -
Amo17g0667 522 MobiDBLite consensus disorder prediction 361 429 - -
Amo17g0667 522 MobiDBLite consensus disorder prediction 163 180 - -
Amo17g0667 522 SMART B3_2 248 342 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0667 Amo-Chr17 14737678 14747011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0667 120 338 B3 DNA Binding Superfamily AT5G58280 51.600 3.81e-71 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo17g0667 B3 3.2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0667 - - lang:109355714 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0667 17 14737678 14747011 Amo17g0667 17 14737678 14747011 ECH
Amo17g0667 17 14737678 14747011 Amo07g0465 07 4655973 4665002 hybridization