Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0665 ATGCTTGCTGCTGCTGCTTCTGCATCTAAGCATCTTCTTCAACGCGATGTTAGACCCACCACTATTTTTGCCTCTCACAGTGTAAGTGGAAATCATGTTCGGTTGCTCTTAACTGCTTCTGGCATAAGCAGAAACTCAATTCACAGAAGCATAGGAAGCAAAAATTTTGGTTTTGGAAACCATCCGCAACAACACACAACATGCCCAAGTTTGCTTTTCTCTGTAAAGGGGTTCCTCTCGGATTCATCACCTTCCTCTTCCTCGTCAAATTCATCTCCTTCACTACATGGCAGAGTAACCAGGCCTTATATACTACAAACTAGTTCAACGGTAGATGGAAGAGCATTGTTCTCAACTTCAACTAAAAATGATGATGCAGCTGCACCTAAGCAGAATGAGAGTACCAGTAACAAAAAGAATGTTTCCAGCATTGTTAAGTCAGCTTCAGGGGATCAAGTTGCTGATATGAAGATCCTTCGGACGCTTGCCAGTTACCTGTGGATGAAAGAGAATCCTGAATTTCGGTTTCGGGTTGTGGCTGCTTTGGGTTTCCTTGTTGGGGCTAAGGTTTTGAATGTTCAAGTACCTTTCTTTTTCAAGCTGGCTGTTGATTGGTTGACAACTGCCACAGGCAATGCTGATTCTCTTGCTTCTTTTACGGCTGCGAATTCAACTGCAGTGGCTCTTTTTGCGACACCAGTGGCTGTGTTGGTTGGATATGGAATTGCTCGTACCGGAGCTTCAGCGTTCAACGAATTGCGGACTGCGGTATTTTCTAAGGTAGCACTACGAACAATTCGCCTAGTATCTAGGAAGGTCTTCTCACATTTGCATGACCTTGACCTCCGGTATCATCTAAGCCGAGAAACTGGTGGCCTAAGTAGAATAATTGATCGTGGAAGCCGTGCAATAAATTTCATACTCTCGTCTATGGTGTTTAATGTAGTCCCCACTATATTAGAGATATCTATGGTATCAGGTATATTGGCCTACAAATTTGGAGCTCCTTTTGCATGGATTACTTCTCTATCGGTTGCTGCTTATGTTATGTTTACACTGACTATCACACAGTGGAGGACTAAGTTCAGGAAAGCCATGAATAAGGCTGATAATGATGCTAGTACAAAGGCTATTGATTCGCTGATTAATTATGAGACTGTCAAATATTTCAATAATGAAGATTATGAAGCTGATAAATATGATGAGTACCTAAAGAAGTATGAGGGTGCTGCTCTGAAAACACAACGCAGTCTTGCTTTGTTAAACTTCGGTCAAAATATTATATTTAGTACAGCTCTATCAACAGCAATGGTTCTGTGTTCCTATGGGATTATGGACGGCAGGTTGACAGTTGGTGATTTGGTTATGGTCAATGGCCTTCTCTTCCAACTGTCTCTTCCACTCAACTTCCTAGGTAGTGTTTATCGCGAGACTATACAGAGTCTAGTTGACATGAAGTCCATGTTTCAGTTACTTGAGGAAACAGCAGACATTAAGGATAAAGAAGATGCAAAGCCTCTAAGATTTGATGGAGGAAGAATCGAATTTGACAATGTACATTTTAGTTACCTCACAGAAAGAAAGATACTAGATGGGGTATCACTTGTTGTGCCAGCTGGTAAAAGCGTGGCAATTGTCGGAACAAGCGGAAGTGGAAAATCAACGATTCTTAGATTGATATTCAGGTTTTTTGATCCTCATTCTGGAAATATAAGGATAGATGGTCAAGATATTCAGCAGGTAACCCTTGAGAGTTTGCGGAAGCTCATCGGTGTTGTTCCTCAAGACACTGTACTTTTCAATGATACCATATTTCATAATATTCACTATGGTCGACTTTCAGCTACAGAAGAAGAGGTCTACAATGCTGCTCGGCAAGCGGCAATTCATGACACTATCATGAATTTTCCTCAGAAATATTCGACTGTTGTGGGAGAGCGAGGGCTCAAGCTAAGTGGTGGCGAGAAGCAACGTGTTGCCCTAGCTCGTGCTTTCTTAAAAGCACCTGCGATACTGTTGTGTGATGAAGCTACAAGTGCTCTTGACAGCACAACAGAAGCAGAGATTTTAAGTGCATTGAAGTCGCTATCGAATAACCGAACTTCCATATTCATTGCTCACAGGCTTACTACCGCAATGCAGTGTGACGAGATCATAGTTTTGGAAAATGGAAAGGTGATTGAACAAGGACCCCATGAAGTTCTCTTATCAAATGGAGGAAGATATGCACAGCTCTGGGGACAACAAAATAACACAATTGATGCAATCGATACAGCTATCAAACTTGGTGTTCAAACTTAA 2301 0.4176 MLAAAASASKHLLQRDVRPTTIFASHSVSGNHVRLLLTASGISRNSIHRSIGSKNFGFGNHPQQHTTCPSLLFSVKGFLSDSSPSSSSSNSSPSLHGRVTRPYILQTSSTVDGRALFSTSTKNDDAAAPKQNESTSNKKNVSSIVKSASGDQVADMKILRTLASYLWMKENPEFRFRVVAALGFLVGAKVLNVQVPFFFKLAVDWLTTATGNADSLASFTAANSTAVALFATPVAVLVGYGIARTGASAFNELRTAVFSKVALRTIRLVSRKVFSHLHDLDLRYHLSRETGGLSRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWITSLSVAAYVMFTLTITQWRTKFRKAMNKADNDASTKAIDSLINYETVKYFNNEDYEADKYDEYLKKYEGAALKTQRSLALLNFGQNIIFSTALSTAMVLCSYGIMDGRLTVGDLVMVNGLLFQLSLPLNFLGSVYRETIQSLVDMKSMFQLLEETADIKDKEDAKPLRFDGGRIEFDNVHFSYLTERKILDGVSLVVPAGKSVAIVGTSGSGKSTILRLIFRFFDPHSGNIRIDGQDIQQVTLESLRKLIGVVPQDTVLFNDTIFHNIHYGRLSATEEEVYNAARQAAIHDTIMNFPQKYSTVVGERGLKLSGGEKQRVALARAFLKAPAILLCDEATSALDSTTEAEILSALKSLSNNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGPHEVLLSNGGRYAQLWGQQNNTIDAIDTAIKLGVQT* 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0665 766 Gene3D ABC transporter type 1, transmembrane domain 165 504 IPR036640 GO:0005524|GO:0016021
Amo17g0665 766 Pfam ABC transporter transmembrane region 181 467 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo17g0665 766 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 179 480 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo17g0665 766 Gene3D - 507 761 IPR027417 -
Amo17g0665 766 CDD ABC_6TM_ATM1_ABCB7 181 488 - -
Amo17g0665 766 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 108 754 IPR039421 -
Amo17g0665 766 ProSitePatterns ABC transporters family signature. 651 665 IPR017871 GO:0005524
Amo17g0665 766 Pfam ABC transporter 530 679 IPR003439 GO:0005524
Amo17g0665 766 CDD ABCC_ATM1_transporter 514 749 - -
Amo17g0665 766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 504 749 IPR027417 -
Amo17g0665 766 SUPERFAMILY ABC transporter transmembrane region 173 494 IPR036640 GO:0005524|GO:0016021
Amo17g0665 766 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 514 748 IPR003439 GO:0005524
Amo17g0665 766 MobiDBLite consensus disorder prediction 120 143 - -
Amo17g0665 766 PANTHER BNAA10G12020D PROTEIN 108 754 - -
Amo17g0665 766 SMART AAA_5 539 725 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0665 Amo-Chr17 14670481 14678487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0665 407 750 Calmodulin-binding Proteins AT2G36910 38.978 6.61e-64 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0665 K05662 - gmx:100787870 1140.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0665 17 14670481 14678487 Amo17g0665 17 14670481 14678487 ECH
Amo17g0665 17 14670481 14678487 Amo07g0458 07 4567354 4575357 hybridization