Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0648 ATGGCTCCTGCATCAGAATCCAATGCAAAGCTACTTGAGATCCTCAAGCTACCACAAGATGAAGAAGAAGTAGATGTCTTCTTGTTTTCTCAAATGGCATGGTCAATTGTGGTTCCAATGGTTGTGAGGACCACAATAGAGCTTGGTGTATTTGACATCATAGCAAAAGAAGGCAAAGGTGCAAAGCTCTCAGCAAAAGATATTGCGGATCACATTGGAAGCAACAACCCTGAAGCAGCATCAATGTTGGATCGTCTTCTTAGGCTTCTTGCAAGTCATTCATTACTGTCTTGTTCTGTTGTTAAAGATCCAGTAGAAAGCTCTAATAACTTGCATCAGAGGCTGTATAGCCTCTCACCTGTTTCCAAATATTTTGTGGGTGATGCTGATGGTGTATCTTTGGGACCTTCCTTGTTGCTGCATCTAGATAAAGTCTTTACCCAAAGTTGGAATGAATTGAAAGGAGCAATCCTTGAAGGAGGTATACCATTCAATAGGGCTCATGGCATGCATGTTTTCGAGTATGCAAAAATTGATGGTAGGTTCAACGAGGTCTTCAACAAAGCAATGCACAACTCCTCCACTTTATTAATGAAGAGGATTCTTGATGTCTACAAAGGCTTCGACCACATCAATAAACTAGTGGATGTTGGTGGTGGTGTTGGGGCAACTATCAAATTAATCACTTCCAAACACCCTCATATTCTTGGTATCAATTTTGATTTGCCTCATGTCATAGAATGTGCCTCAGCCTATGATGATGCCGTGGAACACGTGGGAGGAGATATGTTTGAGAGTGTTCCTAATGGAGATGCCATTTTCATGAAGAGAATACTTCATGACTGGGGCGATGACGAATGCTTGAAGATATTGAAAATTTGCCTTAAGGCTATTCCGAATGATGGGAAGGTCATTGTGGTGGAAACAATTGTTCCCATTGTTCCTGAGCCAACATCTTTTGCCAAGAATGCTTTTAGAAATGATGTTATCATGATGACTCAAATGCCTGGAGGGATTGAGAGAACCAAACAAGATTACATGGACTTAGCAAATGGATCTGGATTTAGTGGAATAAGATTTGTGTGTTGTGTCTCTAGCTTCTGGGTCATGGAATTCTACAAGTAG 1125 0.4098 MAPASESNAKLLEILKLPQDEEEVDVFLFSQMAWSIVVPMVVRTTIELGVFDIIAKEGKGAKLSAKDIADHIGSNNPEAASMLDRLLRLLASHSLLSCSVVKDPVESSNNLHQRLYSLSPVSKYFVGDADGVSLGPSLLLHLDKVFTQSWNELKGAILEGGIPFNRAHGMHVFEYAKIDGRFNEVFNKAMHNSSTLLMKRILDVYKGFDHINKLVDVGGGVGATIKLITSKHPHILGINFDLPHVIECASAYDDAVEHVGGDMFESVPNGDAIFMKRILHDWGDDECLKILKICLKAIPNDGKVIVVETIVPIVPEPTSFAKNAFRNDVIMMTQMPGGIERTKQDYMDLANGSGFSGIRFVCCVSSFWVMEFYK* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0648 374 Pfam Dimerisation domain 40 91 IPR012967 GO:0046983
Amo17g0648 374 Pfam O-methyltransferase domain 150 356 IPR001077 GO:0008171
Amo17g0648 374 SUPERFAMILY "Winged helix" DNA-binding domain 21 128 IPR036390 -
Amo17g0648 374 Gene3D - 9 125 IPR036388 -
Amo17g0648 374 PANTHER O-METHYLTRANSFERASE 1 374 IPR016461 GO:0008168
Amo17g0648 374 PIRSF O-mtase 10 374 IPR016461 GO:0008168
Amo17g0648 374 Gene3D Vaccinia Virus protein VP39 127 374 IPR029063 -
Amo17g0648 374 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 1 374 - -
Amo17g0648 374 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 30 374 IPR016461 GO:0008168
Amo17g0648 374 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 130 373 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0648 Amo-Chr17 13935245 13953491 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0648 21 374 Monolignol Biosynthesis Gene Families AT5G54160 49.153 3.34e-118 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0648 K13066 - gmx:100789402 442.195