Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0646 ATGGCTGCTGCATCAGAATCCGATGCAAAACTACTTGAGCTCCTCAAGCTACCACAAGATGAAGAAGAAGTAGATGGCTTCTTGTTTTCTCAAATGGCATGGTCAATTGTGGTTCCAATGGCTTTGAGGACCACAATAGAGCTTGGTGTATTTGACATCATAGCAAAAGAAGGCAAAGGTGCAAAGCTCTCAGCAAAAGACATTGTTGATCACATTGGAACCAACAACCCTGAAGCAGCATCAATGTTGGATCGTCTTCTTAGGCTTCTTGCAAGTCACTCATTACTGTCTTGTTCTGTTGTTGAAGATCCAGAAAGCTCTAATAACTTGCATCACAGGCTGTATAGCCTCTCACCTGTTTCCAAATATTTTGTGGGTGATGCCGATGGAGCGATCCTTGAAGGAGGTATACCATTCAATAGGGCTCATGGCATGCATGTTTTCGAGTATGCAAAAATTGATGGTAGGTTCAACGAGGTCTTCAACAAAGCAATGCACAACTCCTCCACTTTATTAATGAAGAGGATTCTTGATGTCTACAAAGGTTTCGACCACATCAATAAACTAGTGGATGTTGGTGGTGGTGTTGGGGCAACTATCAAATTAATCACTTCCAAACACCCTCATATTCTTGGTATCAATTTTGATTTGCCTCATGTCATAGAATGTGCCTCAGCCTATGATGATGGTGTGGAGCACATGGGAGGAGATATGTTTGAGAGTGTTCCTAATGCAGATGCCATTTTCATGAAGACAATACTTCATGATTGGGGAGATGAAGAATGCTTGAAGATATTGAAAAATTGCCTCAAGGCTATTCCGAATGATGGGAAGGTTATTGTGGTGGAAACAATGGTTTCCATTTTTCCTGAGCCAACATCTTTTGCCGAGAATGCTTTTAGAAATGATGTTATCATGATGACTCAAATGCCCGGAGGGATTGAGAGAACAAAACAAGATTTCATGGACTTAGCAAATGGATCTGGATTTAGTGGCATAAGATTTGTGTGTTGTGTCTCTAGCTTCTGGGTCATGGAGTTCTACAAGTAA 1050 0.4124 MAAASESDAKLLELLKLPQDEEEVDGFLFSQMAWSIVVPMALRTTIELGVFDIIAKEGKGAKLSAKDIVDHIGTNNPEAASMLDRLLRLLASHSLLSCSVVEDPESSNNLHHRLYSLSPVSKYFVGDADGAILEGGIPFNRAHGMHVFEYAKIDGRFNEVFNKAMHNSSTLLMKRILDVYKGFDHINKLVDVGGGVGATIKLITSKHPHILGINFDLPHVIECASAYDDGVEHMGGDMFESVPNADAIFMKTILHDWGDEECLKILKNCLKAIPNDGKVIVVETMVSIFPEPTSFAENAFRNDVIMMTQMPGGIERTKQDFMDLANGSGFSGIRFVCCVSSFWVMEFYK* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0646 349 Pfam Dimerisation domain 40 91 IPR012967 GO:0046983
Amo17g0646 349 Pfam O-methyltransferase domain 131 331 IPR001077 GO:0008171
Amo17g0646 349 PANTHER O-METHYLTRANSFERASE 130 349 IPR016461 GO:0008168
Amo17g0646 349 Gene3D - 37 176 IPR036388 -
Amo17g0646 349 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 127 348 IPR029063 -
Amo17g0646 349 SUPERFAMILY "Winged helix" DNA-binding domain 27 127 IPR036390 -
Amo17g0646 349 PANTHER O-METHYLTRANSFERASE 14 130 IPR016461 GO:0008168
Amo17g0646 349 PIRSF O-mtase 129 349 IPR016461 GO:0008168
Amo17g0646 349 PIRSF O-mtase 10 133 IPR016461 GO:0008168
Amo17g0646 349 Gene3D Vaccinia Virus protein VP39 158 339 IPR029063 -
Amo17g0646 349 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 30 349 IPR016461 GO:0008168
Amo17g0646 349 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 14 130 - -
Amo17g0646 349 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 130 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0646 Amo-Chr17 13843629 13848223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0646 31 349 Monolignol Biosynthesis Gene Families AT5G54160 47.230 2.33e-106 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0646 K13066 - gmx:100789402 405.986