Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0612 ATGAAGCTTTCAACATCAGGGTTGCCTCAGCAGGGACAACATGAAGGAGGGGAGAAGAAATGCTTGAATTCTGAGCTATGGCATGCATGTGCGGGTCCATTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTTGCTGCCACAACTAACCGAGAAGTTGATGGCCACATACCAAATTACCCGAGCTTGCCGCCCCAATTGATTTGCCAACTTCACAATGTTACGATGCATGCAGATGTTGAAACAGATGAAGTTTATGCCCAAATGACACTGCAGCCGTTGACTCCGCAAGAGCAGAAGGATACCTTTCTTCCCATGGAATTGGGAGTTCCAAGTAAGCAGCCCTCGAATTATTTTTGCAAGACCTTAACGGCTAGTGACACCAGCACACATGGAGGGTTTTCCGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCGCTGGATTTCTCYCAGCAACCGCCTGCTCAAGAATTAATTGCTAGGGATCTCCATGATGTTGAGTGGAAATTTCGTCATATTTTTAGAGGGCAGCCAAAGAGGCACCTTCTTACTACTGGCTGGAGTGTATTTGTTAGTGCCAAAAGACTTGTGGCAGGAGATTCTGTGCTTTTCATATGGAACGAAAAGAATCAGCTTCTTTTGGGAATACGTCGTGCCAATAGACCACAAACTGTAATGCCTTCGTCAGTTCTATCCAGTGACAGTATGCATATTGGCCTTCTGGCAGCTGCTGCCCATGCTGCAGCAACTAATAGTTGTTTCACAGTGTTCTATAATCCAAGGGCTAGTCCATCCGAGTTTGTCATACCACTTTCAAAGTATATCAAAGCTGTATACCATACCCGTGTTTCTGTTGGTATGCGTTTCAGGATGCTTTTCGAGACTGAAGAATCAAGTGTCCGGAGGTACATGGGTACAATAACTGGAATAAGTGACTTGGATCCAGTTCGATGGCCAAATTCTCATTGGCGATCTGTAAAGGTTGGTTGGGATGAATCCACAGCAGGAGATAGGCAGCCACGAGTATCATTATGGGAAATTGAGCCTTTAACAACATTCCCAATGTATCCATCACTATTCCCACTCAGATTGAAACGTCCATGGCATCCCGGCACCTCATCTTTTCTTGATGGCAGAGATGATGCAACTAATGGGCTAATGTGGCTGAGAGGTGGAGCTGGCGACCAAGGTCTGAATTCCCTCAATTTTCAAACTGTCGGRATGCTGCCATGGATGCAGCAGAGGCTRGATCCGGCTTTGCTTGGAAATGATCACAATCAGCAATACCAAGCAATGTTGGCAGCTGGTTTGCAAAACATGGGGAGTGGAGAACTCTTGAGGCAACAAATGATGAATTTCCAACAGCCTTTCAATTATCTCCAGCAACCAGGAAATGTCAACACTCCTATCCAGCTTCAGCAGCAGCAAACAATTCAGCAATCAGTGACTTCTAATATCTTGCAGCAACAAGCCCCGGTATTGACAGAGAACTTGTCTCAGCAGCTCTTTCAGAAATCGAACAACCGAGAAGACCATGCGCAGCAGCAGCATCAGCATCAGCAGCACACTTATCAGGATGCACTTTTAGTTCAAGGTGACCAGCTCCACCAAAGGCAACACTCTAGCTTGCCTTCACCATCGTACTCGAAACCTGAGTTTGTAGATGGCAGCATGAAGTTTGAAGGATCAGGTTCGCCAGGACAGAACATGCTTGGTTCACTTTGCCCTGAAGGGAGCAGCAATCTCTTGAATCTATCTAGAGGTGGTCAGTCTATACCAACCGAACAGTTGCCCCAACAATCATGGCCCCCAAAGTATACACCTCTTCAGGTCAATGCTTTCAGCAACTCAATGTCACACGTGCAATATTCTGGAAAAGATATTGCAGTGGCATCACCACATCGTAATTCAGATGCTCAGAACCCGACTCTCTTTGGAGTCAATATCGATTCATCTGGTCTTCTACTCCCCACCACTGTTCCCCATTACACAACTTCATCTGCTGATACCGATGCTTCAACAATGCCGTTAGGGGATTCTGGATTCCAGGGCCCTCTATATGGTTGCATGCAAGATTCATCCGAGTTAATGCAAAGTGCGGGACAAGTTGACCCCCAAAACCAGACACCAACATTTGTCAAGGTTTATAAATCAGGGTCAGTTGGGCGCTCACTTGACATCTCCCGGTTCAGCAGCTATCATGAACTGAGAGAAGAGTTGGCTCAGATGTTTGGAATTGAGGGGAAGTTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAATGATATTCTTCTCCTTGGGGACGATCCATGGGAATCATTTGTCAACAATGTTTGGTATATCAAAATACTTTCACCTGAGGATATTCAGAAGATGGGAGAACAAGCCGTAGAGTCTCGTGACGGTGTTCCTGGCCTACCATCGATAGGCGAATACTGA 2490 0.4651 MKLSTSGLPQQGQHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGVPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFLDGRDDATNGLMWLRGGAGDQGLNSLNFQTVGMLPWMQQRLDPALLGNDHNQQYQAMLAAGLQNMGSGELLRQQMMNFQQPFNYLQQPGNVNTPIQLQQQQTIQQSVTSNILQQQAPVLTENLSQQLFQKSNNREDHAQQQHQHQQHTYQDALLVQGDQLHQRQHSSLPSPSYSKPEFVDGSMKFEGSGSPGQNMLGSLCPEGSSNLLNLSRGGQSIPTEQLPQQSWPPKYTPLQVNAFSNSMSHVQYSGKDIAVASPHRNSDAQNPTLFGVNIDSSGLLLPTTVPHYTTSSADTDASTMPLGDSGFQGPLYGCMQDSSELMQSAGQVDPQNQTPTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDILLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESRDGVPGLPSIGEY* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0612 829 PANTHER AUXIN RESPONSE FACTOR 1 817 - -
Amo17g0612 829 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Amo17g0612 829 CDD B3_DNA 128 229 IPR003340 GO:0003677
Amo17g0612 829 Gene3D - 293 365 - -
Amo17g0612 829 ProSiteProfiles PB1 domain profile. 721 805 IPR000270 GO:0005515
Amo17g0612 829 SMART B3_2 129 231 IPR003340 GO:0003677
Amo17g0612 829 Gene3D - 717 810 - -
Amo17g0612 829 SUPERFAMILY DNA-binding pseudobarrel domain 113 258 IPR015300 -
Amo17g0612 829 Pfam Auxin response factor 255 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Amo17g0612 829 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
Amo17g0612 829 Gene3D - 127 230 IPR015300 -
Amo17g0612 829 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 817 IPR044835 GO:0003677|GO:0006355|GO:0009725
Amo17g0612 829 Pfam AUX/IAA family 716 805 IPR033389 -
Amo17g0612 829 SUPERFAMILY CAD & PB1 domains 719 795 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0612 Amo-Chr17 13226332 13233203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0612 99 825 B3 DNA Binding Superfamily AT5G37020 68.529 0.0 934
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Amo17g0612 AUX_IAA 3.9e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0612 - - adu:107458034 1665.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0612 17 13226332 13233203 Amo07g0912 07 16729308 16737055 hybridization