Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0581 ATGCCGTTAGAAGGGATTTTCATGGAAGCAAGTTCATCAACCACACCTACCCCTGATCTTTCCCTTCAAATAAGCCCTCCAACTATCTCTTCTTCTTCATCTTCTTTGATCTGCAAAGGTAGTAGTAGTAGTAGTAGTAATCATCATAATAACCATAATAATAATAATAATAACTTCCCTGAGCTTTCTCTTGGAAGCAATTTCATCAATTATTCAAATAGCAGCAGCAGCAGCAGTTATTATAGAGCGATTAGCGGTGCTCATCATCACATAAATTATGGAGGAGTTTCACTTCTTGATGCATCTGACGGTGGAGGAGTGTTAAGAAGGCCAATCAAGGGTATTCCGGTGTATCACAACCGTTCGTTTCCCTTCATGGCAACATCATCATCACCGTCAACAATGGAATATTCTAGAGAAAACAACAAGGTTAATATGTGTTCATATCACCACCACCAATACATGATTCCTTCTTCATCACCATCATCACTACCTAATAATAACAGTAATTACTTTATTGGACCCGCACCTTCTTCTTCTTCTTCTTCTTCGCCGGCTTTGGATCCAATCACAAGGCTCACTGCCTTCAAATCTCATCATCATCCATTGCACCATCATCATCATGAAGTACCACCATCGCATCATCATCATCATCACCATCATCATGGTGGGTTTATGATGCGATCCAGCAGGTTCTTGCCCAAGCTACCAACAAAGAGGAGCATGAGAGCGCCCAGAATGAGGTGGACAAGCACCCTCCATGCCCGATTTGTTCATGCTGTTGAGCTTCTTGGCGGCCATGAAAGAGCAACTCCAAAGTCAGTTCTTGAACTCATGGATGTGAAGGATCTCACATTAGCCCATGTCAAAAGCCATTTGCAGATGTATAGAACTGTTAAGACCACTGACAAGCCTGCAGCTTCTTCAGATGGATCCGGGGACGATGACATGTCGCCGGTGGGCGGCAGCGGTGACTGTAGTGGCAGTCTCCGGCAATTTTCGGACCAAAGAGGGCGGCCGGATCGGTCATTATTGCAACAAGATATGGACTACTCTTCCACCACCACCACTCTATGGAGTAACTCTTCAAGTTGTAGAGAGACATGGCAACAAACTACATCTGATATAAATGGTCTAAGACAACCTATCTTACACTCTCAAACAAAATCGGGAGGGCAAAATAGTCATATTCAGGAGTGCGATTCAACGCAACTGAAGAACAATTTGCAAGGTTCTAATAATTTGGAATGCAAGAACCCATGCTTGGAGTTCACATTAGGCAGACCTGATTGGAATGGCAAAGAACAAGCCTAA 1314 0.4346 MPLEGIFMEASSSTTPTPDLSLQISPPTISSSSSSLICKGSSSSSSNHHNNHNNNNNNFPELSLGSNFINYSNSSSSSSYYRAISGAHHHINYGGVSLLDASDGGGVLRRPIKGIPVYHNRSFPFMATSSSPSTMEYSRENNKVNMCSYHHHQYMIPSSSPSSLPNNNSNYFIGPAPSSSSSSSPALDPITRLTAFKSHHHPLHHHHHEVPPSHHHHHHHHHGGFMMRSSRFLPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSDGSGDDDMSPVGGSGDCSGSLRQFSDQRGRPDRSLLQQDMDYSSTTTTLWSNSSSCRETWQQTTSDINGLRQPILHSQTKSGGQNSHIQECDSTQLKNNLQGSNNLECKNPCLEFTLGRPDWNGKEQA* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0581 437 MobiDBLite consensus disorder prediction 200 224 - -
Amo17g0581 437 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 245 298 IPR006447 GO:0003677
Amo17g0581 437 SUPERFAMILY Homeodomain-like 242 298 IPR009057 -
Amo17g0581 437 MobiDBLite consensus disorder prediction 1 58 - -
Amo17g0581 437 MobiDBLite consensus disorder prediction 8 58 - -
Amo17g0581 437 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 69 - -
Amo17g0581 437 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 80 437 - -
Amo17g0581 437 Gene3D - 244 301 - -
Amo17g0581 437 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 69 IPR044847 GO:0000976|GO:0006355|GO:0010158
Amo17g0581 437 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 80 437 IPR044847 GO:0000976|GO:0006355|GO:0010158
Amo17g0581 437 MobiDBLite consensus disorder prediction 300 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0581 Amo-Chr17 12030037 12037099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0581 227 434 G2-like Transcription Factor Family AT5G16560 60.550 1.50e-70 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo17g0581 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0581 - - lja:Lj0g3v0089499.2 359.762