Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0574 ATGGAGGAAGAGGATGAAGATGGAAGCATTGAAAGCTTATTAAGATGGGCATCACATATTGGAATCTCGGATGCATCAACAACCACCCACCATTCTCTCTCTCTGGGTTCTTCTCTCTTTGTCTCTCACTTTCCTCACTCTGGAGGTAGAGGTTTGGCTGCTGTAAGAGACCTTAGGATGGGGGAACTCATTCTCAGAGTTCCAAAATCTGCTTTGATGACAACTCATAGTGTTATGCAACATACAAATCTCTCTCAAGCTCTTAATAGGCACCCTTCTCTTTCTTCAACCCAGATACTGAATGTTTGCCTGTTGTATGAAGTTGGAAAAGGAAAGGCTTCGAGGTGGTATCCTTACCTCATGCATTTACCAAAGAGTTATGACATCCTAGCCATGTTTGGTGAATTCGAGAAAACTGCTCTGCAAGTGGATGAGGCTATATGGGTAACTGAAAAAGCCGTGCTAAAAACCAAATCAGATTGGCAGCAAGCTCATGCTTTGATGGAAGATCTCAAATTTAAGCCCCGGCTTCTAACATTTAAGGCTTGGGTGTGGGCTTCTGCAACGATATCTTCCCGGACATTGCATATACCGTGGGATTCAGCTGGGTGTTTATGCCCTGTGGGTGACTTGTTTAATTATGATGCACCTGGAAAGGAGCCATCTGACATTGGGGATCTAGAGGATTTGCTATCTAGCTCTTCAATCCATGATGGTTCCTTATCAAATGAAGACAATACTACAGTCGCAGATGCAGAGCAGCTTGATTCCCAGTCTCAGAGATTAACAGATGGGGGGTTTGAAGAAGATGCTAATGCATATTGCTTTTATGCTAGGGCAAATTACAATAAAGGAGATCAGGTTCTGCTATGTTATGGAACTTACACAAATTTAGAGCTTCTTGAACACTATGGTTTTATCCTACAAGAAAATCCAAATGATAAAGTGTTTATTCCTCTGGAACCTGCTGTGTATTCTTCCACTTCTTGGTCCAGGGAATCATTGTACATCCATTACAATGGGAAGCCTTCCTTTGCGCTACTAGCTGCATTGCGGCTGTGGGCGACTCCTCAAATCAAGAGGAGGTCTGTTGCACATCTTGTTTATTCCGGATCTAAAATCTCCGCAGACAATGAAAATTTCATCATGAAATGGCTATTGAAGACTTGCCATGGCGTCTTAAAGAATTTGCCAACATCTATTGAAGATGACACCTTGCTCCTGAATGCAATGGATAATAGTCAAGATTTTTGTACTTTTTTGGAGGTTACAAAACTCATGTCTTTACGGGATGAAGTTGATACCTTCTTAGAAGCTCATAATATGAAGGATAAATGTAGTGATAGCAGTATAGTTTTATCTAGAAAAACAAGGTGGTCTATGGATAAGTGGAAGTTGAGTATTCAATGGAGAATCAATTATAAGAAAGTCCTCCTTGATTGTATCTCTTATTGTAGTCAAATATTAGATTCTCTCGTGGAATAA 1485 0.4074 MEEEDEDGSIESLLRWASHIGISDASTTTHHSLSLGSSLFVSHFPHSGGRGLAAVRDLRMGELILRVPKSALMTTHSVMQHTNLSQALNRHPSLSSTQILNVCLLYEVGKGKASRWYPYLMHLPKSYDILAMFGEFEKTALQVDEAIWVTEKAVLKTKSDWQQAHALMEDLKFKPRLLTFKAWVWASATISSRTLHIPWDSAGCLCPVGDLFNYDAPGKEPSDIGDLEDLLSSSSIHDGSLSNEDNTTVADAEQLDSQSQRLTDGGFEEDANAYCFYARANYNKGDQVLLCYGTYTNLELLEHYGFILQENPNDKVFIPLEPAVYSSTSWSRESLYIHYNGKPSFALLAALRLWATPQIKRRSVAHLVYSGSKISADNENFIMKWLLKTCHGVLKNLPTSIEDDTLLLNAMDNSQDFCTFLEVTKLMSLRDEVDTFLEAHNMKDKCSDSSIVLSRKTRWSMDKWKLSIQWRINYKKVLLDCISYCSQILDSLVE* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0574 494 Gene3D set domain protein methyltransferase, domain 1 7 307 - -
Amo17g0574 494 SUPERFAMILY SET domain 10 311 IPR046341 -
Amo17g0574 494 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 6 479 - -
Amo17g0574 494 Pfam SET domain 49 293 IPR001214 GO:0005515
Amo17g0574 494 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 303 415 IPR036464 -
Amo17g0574 494 Pfam Rubisco LSMT substrate-binding 342 415 IPR015353 -
Amo17g0574 494 PANTHER PROTEIN SET DOMAIN GROUP 40 6 479 - -
Amo17g0574 494 CDD SET_LSMT 38 307 - -
Amo17g0574 494 Gene3D - 320 494 IPR036464 -
Amo17g0574 494 ProSiteProfiles SET domain profile. 31 293 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0574 Amo-Chr17 11900623 11903546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0574 49 354 NAC Transcription Factor Family AT3G56570 22.414 4.39e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo17g0574 SET 7.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0574 - - ahf:112702602 878.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0574 17 11900623 11903546 Amo07g0887 07 16263694 16264799 hybridization