Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0571 ATGGTTCTTTCGGAAACCGCTACCGGCACCGATGTCTCAGTCCACTCTACCTTCGCCTCGCGCTACGTCCGCGCCTCCCTTCCCAGGTTTAGGATGCCGGAAAATTCCATACCAAAGGAAGCAGCGTATCAGATAATAAACGACGAGCTGATGCTGGACGGAAACCCAAGACTAAATCTGGCGTCGTTTGTAACGACATGGATGGAGCCTGAATGCGACAAACTCATCATGGCTGCCATTAACAAGAACTATGTTGATATGGACGAATACCCTGTCACCACTGAGCTCCAGAACCGATGTGTGAACATGATAGCACATCTATTCAATGCGCCACTCGAAGACGGAGAGCCGGCAGTTGGCGTCGGCACAGTTGGGTCGTCGGAGGCCATAATGTTGGCCGGGTTGGCCTTCAAACGGAAGTGGCAGAACAGAAGGAAGGAACAGGGATTGCCTTTTGACAAGCCCAACATTGTGACTGGTGCCAATGTGCAGGTTTGTTGGGAGAAATTCGCCAGGTACTTCGAGGTGGAACTCAAAGAGGTGAAGCTTCGCGATGATTACTATGTAATGGACCCTGAGTTGGCCGTGGAAATGGTTGATGAGAACACCATTTGTGTGGCTGCAATCCTTGGTTCCACTCTCAATGGAGAGTTTGAAGATGTCAAGCGCCTTAACGACCTCCTTGAGCAAAAGAATAAGGAAACAGGATGGGAAACTCCAATTCACGTGGATGCAGCAAGTGGAGGATTCATAGCGCCATTTCTATATCCAGATCTTGTGTGGGACTTTAGGTTACCATTAGTGAAGAGCATTAATGTTAGTGGCCACAAGTATGGTCTTGTCTATGCTGGCATTGGTTGGTCCATTTGGAGAAGCAAAGAAGACCTTCCTGAGGAACTCATCTTCCATATTAACTATCTTGGTGCTGATCAACCCACTTTTACTCTCAACTTCTCCAAGGGTTCTAGCCAAGTTATTGCTCAGTATTACCAACTAATTCGTTTGGGTTATGAGGGATATAAGAATGTCATGGAAAATTGTAGAGATAACATGCTAGTACTTAAAGAGGGACTCGAGAAAACAGACCGTTTTAAAATTGTATCAAAAGATAACGGCGTGCCGTTGGTGGCCTTCACACTCAAGGACAGTAGCCACTTCAACGAGTTCCAAGTCTCGGACTTCTTGCGTCGCTTTGGTTGGATAGTGCCGGCATACACCATGCCTCCAGACGCGCAGCATGTTACCGTGCTGCGTGTTGTCATAAGGGAGGACTTCTCGCGCACCCTCGCGGAGCGCCTTGTCCTCGATGTCCAGAAAGTGTTGCATGAGCTGGAATTGCTTCCTGCAAGGGTAGTGTCCAACACCACCGTGACACCCAATGGAGAAGTTGTGGACAATAATGTGAAAGTCAAGAAGAGTGAATTGGAAACACAAAGGGAAATCACTATGGTTTGGAAGAAATTTGTGATGGAGAGGAAGAAGATGAATGAGAAGATGAATGGTGTTTGTTAG 1512 0.4749 MVLSETATGTDVSVHSTFASRYVRASLPRFRMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEDGEPAVGVGTVGSSEAIMLAGLAFKRKWQNRRKEQGLPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLRDDYYVMDPELAVEMVDENTICVAAILGSTLNGEFEDVKRLNDLLEQKNKETGWETPIHVDAASGGFIAPFLYPDLVWDFRLPLVKSINVSGHKYGLVYAGIGWSIWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYKNVMENCRDNMLVLKEGLEKTDRFKIVSKDNGVPLVAFTLKDSSHFNEFQVSDFLRRFGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLVLDVQKVLHELELLPARVVSNTTVTPNGEVVDNNVKVKKSELETQREITMVWKKFVMERKKMNEKMNGVC* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0571 503 PANTHER GLUTAMATE DECARBOXYLASE 1 503 - -
Amo17g0571 503 Gene3D - 1 65 - -
Amo17g0571 503 PANTHER GLUTAMATE DECARBOXYLASE 1 503 IPR010107 GO:0004351|GO:0006536|GO:0030170
Amo17g0571 503 Gene3D - 361 448 - -
Amo17g0571 503 Coils Coil 214 234 - -
Amo17g0571 503 Gene3D - 66 360 IPR015421 GO:0003824
Amo17g0571 503 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Amo17g0571 503 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 445 IPR010107 GO:0004351|GO:0006536|GO:0030170
Amo17g0571 503 CDD DOPA_deC_like 59 439 - -
Amo17g0571 503 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0571 Amo-Chr17 11825477 11831044 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0571 1 503 Calmodulin-binding Proteins AT5G17330 81.225 0.0 864
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0571 K01580 - gmx:100796533 912.138