Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0565 ATGGCTGTTCAAGATCAAAGTGGAGTTGCTAGATTACAGGGTGGTCTCACAGTAGGAAATGAAGTATCTTTTGTTTCTGGAGCACACTCAGTTCCACATGTTCAATTGAATGATCAATTTTCCTGCGGAAATGACTATTCCCCCAAGGTGAGGAAACCATATACAATTACAAAGCAGCGAGAGCGTTGGACAGATGATGAACATAAGAAGTTCCTTGAGGCTTTGAAGCTGTATGGCCGAGCTTGGCGTCGAATCGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTGTCCGAGACTCGAGTGGGAACCCTACAAGCCTGGTGGAGCCAATTGAGATTCCACCTCCTCGACCAAAGCGAAAGCCGATGCATCCCTACCCTCGGAAGCTAGTAGAGATCCCCAAGAGGGAAATTTCTAACCTGGAACATTCAGTGAGGTCTAATTCTCCTAAGTCAGCAGATGTGGATCAAGAAAACAAATCTCCCAAGTCAGTACTATCTGCAGTTGTTTCGGACACCCTTGGTTCCTCGGATTCAGATACACTGGCTGGAAGTTTATCCCCAGTGTCATCCATGAGTGGCGGTAATACCAGTAATTCTGCACTTGCTGAGCCCAAATCATCATTTGAGGAAGATAGGTCCACACCTCTAGTTGGACTAAATGCCAATTCTGCTCAACATGAGCACCCTCTTGTGAAACTGGAGCTTTCCCACAATGAAAGTGTTTCTACCAAAGATGATGTGGCTGAAGAATCATCCAGCCGCACTCTAAAACTTTTCGGAACAACCCTATTGTTAACAGATACCTGTACTCCAATCAATGAGGTATCCAAACCTGTACCTATCAATACTATGCATCTATTGCAACTTCAGAGCAGAAATTCAGATGCTACAAAAGATCCTGCAACCGTTGTTGCACCTTGGTGGATTCTTTCACACAACAGACCATTCATACCACTGCACAAGCAGCCTGAGGAGAAGAATCTGGATTCTGATCTTGGGGAATTCGAAACCAAAGAAGTTCAAAAGGAACCGTCATGGAGCGATTCGAACACTAGTTCAGTTAGTGATGAAGAGAACACTGCAAAAAGTAAGGAGCAAGGCATGAGTTGCATAAGGGTGAGGCCTAGAACTTTTGGCAAAGGGTTTGTGCCATATAAAAGGTGTATGGCAGAAAGAGAAAAGAACCATTACTATTCAACAATAACATGTGAGAAGAGAGAAGAACAAAGGATCAAGCTTTCCTTATAA 1287 0.4375 MAVQDQSGVARLQGGLTVGNEVSFVSGAHSVPHVQLNDQFSCGNDYSPKVRKPYTITKQRERWTDDEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVVRDSSGNPTSLVEPIEIPPPRPKRKPMHPYPRKLVEIPKREISNLEHSVRSNSPKSADVDQENKSPKSVLSAVVSDTLGSSDSDTLAGSLSPVSSMSGGNTSNSALAEPKSSFEEDRSTPLVGLNANSAQHEHPLVKLELSHNESVSTKDDVAEESSSRTLKLFGTTLLLTDTCTPINEVSKPVPINTMHLLQLQSRNSDATKDPATVVAPWWILSHNRPFIPLHKQPEEKNLDSDLGEFETKEVQKEPSWSDSNTSSVSDEENTAKSKEQGMSCIRVRPRTFGKGFVPYKRCMAEREKNHYYSTITCEKREEQRIKLSL* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0565 428 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
Amo17g0565 428 MobiDBLite consensus disorder prediction 155 217 - -
Amo17g0565 428 Gene3D - 62 109 - -
Amo17g0565 428 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Amo17g0565 428 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Amo17g0565 428 SMART sant 59 107 IPR001005 -
Amo17g0565 428 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Amo17g0565 428 MobiDBLite consensus disorder prediction 111 226 - -
Amo17g0565 428 MobiDBLite consensus disorder prediction 126 154 - -
Amo17g0565 428 SUPERFAMILY Homeodomain-like 54 107 IPR009057 -
Amo17g0565 428 MobiDBLite consensus disorder prediction 349 381 - -
Amo17g0565 428 PANTHER SWI/SNF COMPLEX-RELATED 35 413 - -
Amo17g0565 428 CDD SANT 62 105 IPR001005 -
Amo17g0565 428 PANTHER PROTEIN REVEILLE 7-RELATED 35 413 - -
Amo17g0565 428 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0565 Amo-Chr17 11732230 11736024 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo17g0565 Myb_DNA-binding 2.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0565 - - gmx:778060 508.064