Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0558 ATGTCTTTCTCTTTGATGGAAGCATGCAAGAAGAGAAGGCGGTGCCCAAAGATCTTCAGCTTCCAGTCCTTCGCCGATCCCGGGTGCCCCGTCACTCCCTCCGCCGCCTTCCGCGACAACGTCAGATCGTTCCTCCGAGAGTGCGCGGAGCTCGAGGAGTACGTCGTTCAGAACAGCCCACTCTGGTGCACCCTTTTGCTCAGCGACAAGACCAACGTCATGGCACCTCTCTACACCCTCGAAGAACAAGTTTGCCAATCTTCCCACCCCTTCTGCGACCATTGCCGCTGTGCAGGTTGGAGTGGTCACTTTGTGTCAAAGAGAAGGTATCATTTCATAATTCCAATGGACAATTGGTGGAATAAACCCTTACCTGAGGATGCTATTGATAATCAGGACCACCTCTTGCATGGTGTGATTCACTGCAATGGCTATGGCCATTTGGTCTGCATTAATGGCATTGAAGGTGGCTCCAAGGTCCTCAGTGGTAGAGAGATCATGGATCTATGGGATAGGATCTGCACAAACCTTGGAGCAAGGAAAATTTCAGTGGAAGATGTTTCAAGGAAGCGATCCATGGATCTTCGCCTACTTCATGGTGTTGCATATGGCCATTCATGGTTTGGTAGGTGGGGCTACAAGTTTTGTCGCGGAAGCTTTGGAGTGACAGGCCAAACCTACTATGAAGCAATTGAAGGTCTAGGTTCCTTAGAGCTTGATGAAATAGTGAGAGATTTAAGCAAGACAAAGTGCCATAAAGAGATCAAGCAAATCATTCGCAGCTATAGAGACATGAGTGAAACTCAGATTACCACATTGAGAGATCTTCTAAGGTTCATGCTCACTGTCAAGTCTCGCGTCCCAATGTCCAAGATATCAATAACCCTCGGAGCTCCTCCTTCTTCGGCTTTCATCTCAAGAAATTCAACCAAACAAGGCTTCTTAAGTAGATCAAATCTGGCAAAGGAGAAGTCCGCAAAGTACAAGAAGTTCAGCACTGCAGTGGCTAATATGGATAGCAGGTGGCCAACAAGGAGGCTAGAGTTTGCTGCACAGGTGATTGTTGATGCACTGAAGGAGCACAAGGCAATGAACTCGGCTTCAGAGGGGATGACGCGGCAGGATGTGAGGGATGCATCTAGGCTTCATATTGGTGATACCGGCTTGCTCGATTATGTGCTGAAATCACTCAACAATGTGATTGTTGGCAACTATGTTGTTCGCCGCATGGTTAACCCCTCAACAAGGATCCTAGAATACACCATTCATGAGGTTGGCAATGGGTTTAAGTCCCCGGAAACTGTGGTTGAGCCTGAGGCAGCGGCTCTTGTAGACCCTCAAGACGAGTCATTTAGGATGCCTGGTAGTGATGTTTATTGTGATGTGTTCTACCTATACAAAAATGTGCTATTGAGATATCCGAATTCAGAACCAGTGGACTTAGCAATTCAGACAATCCTTGATAGCCGGTATTTTGTGAAGGAATGGGATTACATGGATGAGATGCAGCAGGCTTTGACATTCATCTGCCGGCTTAAGCCGAATTTCGTTGATATTAAAGCTGATTTGAGTAGGGAGCAGCCTTGTGGGGAGATTGTGATGGTTCCCCTGCATGCAACGGTTAGAGACCTGAAGCAAGCTGCAGAGGCAGCACTGAGGGATACCTACTGCATTGCAGAGAGGCTCATAGTCACTGAGATCACTGAATTGAATGGTGCAAGTGATAATGAGGTGCTATTTGGATTAATCCAATCCGGAGTGGAGCTTTCTGTGAGGGGGATTTCCATTGACTTGTGCACTCCATTGAAGTTCCAAGGTGAATCCGACAATTGGAAGGTGAGGTGTGAGTGTGGGGCACAAGACGATGATGGTGAGAGAATGGTGGCCTGCGACATATGTGAGGTCTGGCAGCACACAAGGTGTTGTGGCATTGAGGATTCTGAGACAGTGCCACCTTTGTTTGTGTGCTCCGGCTGCTGCGATTCGCTTGCCCCTCGGCAGATGGAGTCACCCTTTGCCATGGATTGTGTTGATGATTTTCTTGTTTCACCAGAGCCTACCTTGTTTCTGGAATATGAATGTGGTTACTGA 2091 0.4782 MSFSLMEACKKRRRCPKIFSFQSFADPGCPVTPSAAFRDNVRSFLRECAELEEYVVQNSPLWCTLLLSDKTNVMAPLYTLEEQVCQSSHPFCDHCRCAGWSGHFVSKRRYHFIIPMDNWWNKPLPEDAIDNQDHLLHGVIHCNGYGHLVCINGIEGGSKVLSGREIMDLWDRICTNLGARKISVEDVSRKRSMDLRLLHGVAYGHSWFGRWGYKFCRGSFGVTGQTYYEAIEGLGSLELDEIVRDLSKTKCHKEIKQIIRSYRDMSETQITTLRDLLRFMLTVKSRVPMSKISITLGAPPSSAFISRNSTKQGFLSRSNLAKEKSAKYKKFSTAVANMDSRWPTRRLEFAAQVIVDALKEHKAMNSASEGMTRQDVRDASRLHIGDTGLLDYVLKSLNNVIVGNYVVRRMVNPSTRILEYTIHEVGNGFKSPETVVEPEAAALVDPQDESFRMPGSDVYCDVFYLYKNVLLRYPNSEPVDLAIQTILDSRYFVKEWDYMDEMQQALTFICRLKPNFVDIKADLSREQPCGEIVMVPLHATVRDLKQAAEAALRDTYCIAERLIVTEITELNGASDNEVLFGLIQSGVELSVRGISIDLCTPLKFQGESDNWKVRCECGAQDDDGERMVACDICEVWQHTRCCGIEDSETVPPLFVCSGCCDSLAPRQMESPFAMDCVDDFLVSPEPTLFLEYECGY* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0558 696 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 10 668 - -
Amo17g0558 696 SMART PHD_3 614 660 IPR001965 -
Amo17g0558 696 ProSitePatterns Zinc finger PHD-type signature. 615 659 IPR019786 -
Amo17g0558 696 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 602 664 IPR013083 -
Amo17g0558 696 SUPERFAMILY FYVE/PHD zinc finger 606 665 IPR011011 -
Amo17g0558 696 CDD PHD_MMD1_like 615 659 - -
Amo17g0558 696 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 10 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0558 Amo-Chr17 11580480 11583443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0558 10 665 PHD Transcription Factor Family AT5G22260 32.062 2.43e-118 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0558 - - mtr:MTR_5g077750 1043.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0558 17 11580480 11583443 Amo17g0558 17 11580480 11583443 ECH