Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0557 ATGGTGTTGAGGAGTAATTCTTCCTCTAAAAGAGTGAACAAGAATAAGCAAGTGGCCCAACCTGAAATCCAGAAGCCTAGATGGCTTGATGCTTTCCTGAGAAACAAGTTTTTTGAGCAGTGCAAGGATCATCCACAGCGCAAGAATGAGTTGAACAAATACTGTATAGACTGTGATCAGGCAGTTTGCCAGTATTGCATTTCATTAGGTCATCAAGACCACATCACACTTAAGGTCTACAGACATGTTTACAAAGATGTTGTCTCCATTGGTACTATGGATAAGTATATTGACTGCTCAGAAATTCAGCGCTACAAATCCAACAAGCGATTGGTTATTTCTCTGAATCCTCTCCCGCACAGTGGTTCGACATCAAACAATGAGGCATCATGCAATACCTGCACAAGAAAGTTGAATGAACCGAATCTATATCGCTACTGCTCCATTTCTTGCAAGGTTAAAGCTATTTCGCCAGAACCTAATGATTTGGTTCCTGCCGTAATTCCTGACCAGAACCAGAATGCTCCTCAGGAAGGAATGGATATTCCTACTCAGGAAAGACCAGAGGCAAATGCCGAATTCCCAAGGCCACGAAAGAGAAGAAGAAAGGGAACACCACATCGAGCTCCATTCTTCTAA 639 0.4257 MVLRSNSSSKRVNKNKQVAQPEIQKPRWLDAFLRNKFFEQCKDHPQRKNELNKYCIDCDQAVCQYCISLGHQDHITLKVYRHVYKDVVSIGTMDKYIDCSEIQRYKSNKRLVISLNPLPHSGSTSNNEASCNTCTRKLNEPNLYRYCSISCKVKAISPEPNDLVPAVIPDQNQNAPQEGMDIPTQERPEANAEFPRPRKRRRKGTPHRAPFF* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0557 212 MobiDBLite consensus disorder prediction 197 212 - -
Amo17g0557 212 Pfam PLATZ transcription factor 81 153 IPR006734 -
Amo17g0557 212 CDD Bbox2 41 79 - -
Amo17g0557 212 MobiDBLite consensus disorder prediction 1 20 - -
Amo17g0557 212 MobiDBLite consensus disorder prediction 170 212 - -
Amo17g0557 212 ProSiteProfiles Zinc finger B-box type profile. 41 79 IPR000315 GO:0008270
Amo17g0557 212 PANTHER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 6 212 - -
Amo17g0557 212 Gene3D Classic Zinc Finger 34 94 - -
Amo17g0557 212 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 6 212 - -
Amo17g0557 212 SUPERFAMILY B-box zinc-binding domain 39 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0557 Amo-Chr17 11577594 11579404 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Amo17g0557 PLATZ 9.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0557 - - adu:107457969 402.519