Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0554 ATGGTTTTGTCTTGGACAAGAGGGAGGGTGTTCCGGCGCGCTCGGAAGGGGAAGGATCTCCAAGTCAACGATTTAGAGGTCGAGATTTCAGTCCCTTCCCACTTCCGGTGTCCGGTCACCCTCGACCTAATGAAGGATCCAGTAACAGTATCCACGGGGATTACCTACGACAGGGACAGTATAGAGAAATGGATCGAGGAAGGGAACAACACGTGCCCGGTAACAAAAAGGGTCTTGACAACCTTTGACATGATCCCCAACCATGCCCTTCGGAGGATGATCCAAGATTGGTGCGTGGAGCACCGTTCTTTTGGAATCGAGAGGATCCCTACTCCTAGGATCCCCGTTACACCGTACGAAGTTTCGGACACGTGTACGAAGATCGTGAATGCCGCGAAACAAGGCGATGAAAACAAGTGCAGGGAGTTGGTGAGGAAGATCAAGGGTTGGGAGAAGGAGAGTGATAGGAACAAGAGGTGCATAGTTGCAAATGGTGCTTCTCTTGCTCTGGTCAACGCCTTTGACTTTTTCTCATCATGGGGTTTTGAGGAGAATAATAATGTTAGTAGTTTGTTAGAGGAGATCTTGGGTGTATTGGCATGGATGAGACCTATTGGTGAGGAGGGTAAGTCCATGTTGGGTTCAAAGAATTCCATGAGTTGCATGGTTTGGTTCTTGTTGAAGGGTAATATAGACCTTTCCATAAAGCAAAGTGTTGCCATGTTGCTCAAGGAAGTTCCAATTGAAGTGTTGGCAAATACCCAAGGTGTTGCTGAAGGCTTGGTTAAGATGATTAAGGAGCCTATTGGGAGTGCCTCAATTACAAAGGCATGTTTATCAATGATTTTTAAATTGGTAACATATTCCAAGGGTAAAGATGTAATTTCACAAAGATTTGTGGAATTGGGTTTGGTTGAAGTTTTGTTGGAGACAATTGTTGATTGTGATAAAGGGGTGTGTGAGAAGGCGTTAGGAGTATTGGATTCAATTTGTGGGACAAAAGAAGGGAAGGAAATTGCCAAGGCTAATGCTCTTACAATTCCACTTGTGGTTAAGAAACTTCTGAGGGTTTCTGAATTGAGTTCTAGCTTTGCGGTTTCAATTGTTTGGAAGATTTGTGATAAGGCCCAAGAAGAAGAAGGGGTTTTTGTTGAGGCACTTCAAGTTGGGGTGTTCCAGAAGCTTCTTGTTTTGTTGCAAGTTGGGTGTGGTGAGAGCACAAAGGAGAAGGCCACTGAGTTGTTGAAGTTGTTGAATGGTTATAGAAGCAAGGTAGATTGTGTTGATACATCTTTGGAATTTCAGCACCTTAAGAAGCCATTCTAA 1326 0.4434 MVLSWTRGRVFRRARKGKDLQVNDLEVEISVPSHFRCPVTLDLMKDPVTVSTGITYDRDSIEKWIEEGNNTCPVTKRVLTTFDMIPNHALRRMIQDWCVEHRSFGIERIPTPRIPVTPYEVSDTCTKIVNAAKQGDENKCRELVRKIKGWEKESDRNKRCIVANGASLALVNAFDFFSSWGFEENNNVSSLLEEILGVLAWMRPIGEEGKSMLGSKNSMSCMVWFLLKGNIDLSIKQSVAMLLKEVPIEVLANTQGVAEGLVKMIKEPIGSASITKACLSMIFKLVTYSKGKDVISQRFVELGLVEVLLETIVDCDKGVCEKALGVLDSICGTKEGKEIAKANALTIPLVVKKLLRVSELSSSFAVSIVWKICDKAQEEEGVFVEALQVGVFQKLLVLLQVGCGESTKEKATELLKLLNGYRSKVDCVDTSLEFQHLKKPF* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0554 441 PANTHER WDSAM1 PROTEIN 8 441 IPR045185 GO:0061630
Amo17g0554 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 106 IPR013083 -
Amo17g0554 441 Pfam U-box domain 31 102 IPR003613 GO:0004842|GO:0016567
Amo17g0554 441 SUPERFAMILY ARM repeat 152 418 IPR016024 -
Amo17g0554 441 SUPERFAMILY RING/U-box 27 106 - -
Amo17g0554 441 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
Amo17g0554 441 CDD RING-Ubox_PUB 35 76 IPR045210 -
Amo17g0554 441 Gene3D - 122 426 IPR011989 -
Amo17g0554 441 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 441 - -
Amo17g0554 441 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Amo17g0554 441 Coils Coil 133 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0554 Amo-Chr17 11544797 11546706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0554 26 441 U-box Gene Family AT5G37490 45.540 1.76e-120 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0554 - - gmx:100795913 605.52