Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0552 ATGAAAAGAAACATTGATCTTGAAGTTGAAGCCTCTGCCGAACACGAATCTGAAGTTAGCAGCCAGGTTGCATCCAGTGTCTCTATCCAAGAAGCCTCAGCAGGTCCTTACAGTGACAGCCTCGATAACTCTTTCATCAGGAATCCAATCGCAGTTCATCCTAACTGGGATGCTGCTTCACTTGACTTAACTCTCAACTTCAAGAACAATGAGTTAGGGGCAACAAGAGATTCATTAGGATTTTCATTCTCAACCACTACTAGTGAGAGCAGCAATGACCCTGCCTCTCAGACCACAGAATCCACCGCACCGCGAAGTTTCTCTTGCAATTACTGCCAGCGCAAGTTTTTCAGCTCTCAAGCTCTTGGCGGACACCAGAATGCTCACAAGAGAGAAAGGACATTGGCAAAAAGGGCCATGAGAATGGGATTTTTCTCTGAGAGATATGCAAGTCTAGCTTCTCTGCCTCTGCATGGTTCTTTCAGGTCTTTCGGAATAAAGGCGCATTCTTCGACAATGCACCATGGCTTCTCACCAACAATAATGAGGCCTGCTCCTGAGTTGAAAAGCAATGCAAGATTTGAGCAAGGATATGTTGGCCTTCCAATGTTCTCGGAGGATGATGACTCGGAACTCATGTGGCCGGGTAGTTTTCGCCAGGTCACAGATGCTGGCAAAAATAATCATCGGGAGTTCATACAGACTGGAAATCCAAATTTGAGTTTCAGTGAGGAAAAAGACAAACCCCCTGCACTTACATGA 762 0.458 MKRNIDLEVEASAEHESEVSSQVASSVSIQEASAGPYSDSLDNSFIRNPIAVHPNWDAASLDLTLNFKNNELGATRDSLGFSFSTTTSESSNDPASQTTESTAPRSFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMGFFSERYASLASLPLHGSFRSFGIKAHSSTMHHGFSPTIMRPAPELKSNARFEQGYVGLPMFSEDDDSELMWPGSFRQVTDAGKNNHREFIQTGNPNLSFSEEKDKPPALT* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0552 253 MobiDBLite consensus disorder prediction 230 253 - -
Amo17g0552 253 Gene3D Classic Zinc Finger 85 152 - -
Amo17g0552 253 MobiDBLite consensus disorder prediction 1 15 - -
Amo17g0552 253 MobiDBLite consensus disorder prediction 16 38 - -
Amo17g0552 253 ProSiteProfiles Zinc finger C2H2 type domain profile. 107 134 IPR013087 -
Amo17g0552 253 PANTHER ZINC FINGER PROTEIN JAGGED 1 249 IPR045320 GO:0003700
Amo17g0552 253 MobiDBLite consensus disorder prediction 1 38 - -
Amo17g0552 253 MobiDBLite consensus disorder prediction 84 104 - -
Amo17g0552 253 ProSitePatterns Zinc finger C2H2 type domain signature. 109 129 IPR013087 -
Amo17g0552 253 PANTHER ZINC FINGER PROTEIN 3-RELATED 1 249 - -
Amo17g0552 253 SUPERFAMILY beta-beta-alpha zinc fingers 104 134 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0552 Amo-Chr17 11510564 11513604 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0552 89 240 C2H2 Transcription Factor Family AT1G66140 51.136 1.26e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo17g0552 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0552 - - gmx:100788768 321.627