Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0543 ATGAACAACACTCTGTTTCTATCCACACTCCTCGTCCTGTTATCCTCCGCCATTGTTTCCGGCGGCGATCTAGCCTCCGACAGAGCAACCCTCCTAACCCTACGGGCCACTGTTGGTGGTCGCTCCCTCCTCTGGAACCTCACGGAACAGAATCCATGCTCATGGACGGGTGTGTTCTGCGAAAACGAAAAGAGAAACAGAGTAACAACGTTGAGGCTCCCAGGCATGGGTCTCTCAGGGAACCTTCCATTGGGTTTGGGTAACCTCACTGAGCTTCAGACCCTCTCTCTCCGATTCAATGCACTCACGGGTCCCATTCCCTCCGATTTCGCCAAACTCACCTCTCTCAGAAACCTCTACCTTCAGGGGAACTTCTTCAATGGCCAAATCCCTGATTTCTTGTTCTCTATGGAGAATTTGGTTAGGTTGAATTTGGGGAAGAACAATTTCAGCGGCGAGATCTCTCCCAAGTTCAATTCTCTTACTCGTTTGGATACTCTCTATTTAGAGAATAATCACTTCACTGGGAGCATCCCTGACCTTAGTGTTCCACCTCTGCATCAGTTCAACGTGTCGAATAATCGGTTGAACGGTTCGGTTCCGGAGCGGTTTTCGGGGTTGAATGAAAGCGCTTTTTCCGGGAATGAGCTCTGTGGGAAGCCCCTTGAAGCTTGCCCTGGTAGTAACAATGGTGGAGGAGGGAGCCATAAGAAGAAGAATAAGCTCTCTGGCGGTGCGATTGCGGGTATTGTTATTGGGTCTGTAATTGGAGCGATTTTGATTCTACTGCTTTTGTTCTTGTTATGCAGAAAATCCAGAAAAACTGATTCCAGGGATGTTTCTGCGGCTGCACCTCCAAAAAGTGTGGAGGTTGCTGACGTGGCACGAGATGGTGGTGGTGCTAGTGGTTCTTCGGCCGTTGCGGGTTCAAAGGTTGAAAGCAAGAGCAATGGTGGTGGTGCAAAAAGTTTAGTATTCTTTGGTGATGTGAATAGGCCGTTTGATCTTGAAGAGTTGCTGAGGGCTTCTGCTGAGGTTCTTGGAAAAGGGACATTCGGAACCACCTATAAGGCCACGATGGATTTGGGGATCAGCGTCGCCGTGAAGCGCCTGAAGGATGTTACCCTGCCGGAGAGGGAGTTCAGGGAGAAGATAGAGCAAGTTGGGAAGATGGTTCATGAGAATTTGGTTCCACTCAGGGGTTACTACTTCAGCAAAGATGAGAAGCTTGTTGTGTATGATTACATGCCAATGGGAAGCTTGTCTGCATTATTACATGCGAATAATGGCGCCGGCAGGACTCCCCTGAATTGGGAAACAAGGTCTGCCATTGCCCTTGGCGCTGCTCGTGGGGTCGCATACCTACATTCACAAGGACCAACATCCTCCCATGGAAACATCAAATCCTCAAATATCCTTCTCACCAAATCATTTGAAGCTCGTGTCTCCGACTTTGGCCTTGCTCATCTTGCTCTCCCGACCGCCACACCCAACCGTATTTCCGGCTATCGAGCCCCAGAGGTCACTGACTCTCGCAAAGTATCACAAAAGGCAGACGTCTACAGCTTTGGTATAATGCTCTTGGAACTCCTAACGGGGAAGGCTCCCACTCATTCCTCACTGAATGAAGATGGTGTAGACCTCCCAAGATGGGTCCAGTCGGTGGTTCAAGACGAGTGGAACACTGAGGTTTTCGACGTGGAGCTCCTTAGGTACCAGAACATTGAGGATGAAATGGTGAAGCTCTTGCAGCTCGCGCTCGAATGCACAGCTCAATACCCCGACAAGAGACCTTCAATGGAGGTGGTTGAAAGCAGGATTCAGGAAATTTCACGTTCTAGTTTAGAGAAAGAGGAAGAAGAAGAAAAAAATGAATTTTCACAACAGTACTACTCTGTTGATTCTGGTCCCCCACAAGCTTGA 1923 0.4909 MNNTLFLSTLLVLLSSAIVSGGDLASDRATLLTLRATVGGRSLLWNLTEQNPCSWTGVFCENEKRNRVTTLRLPGMGLSGNLPLGLGNLTELQTLSLRFNALTGPIPSDFAKLTSLRNLYLQGNFFNGQIPDFLFSMENLVRLNLGKNNFSGEISPKFNSLTRLDTLYLENNHFTGSIPDLSVPPLHQFNVSNNRLNGSVPERFSGLNESAFSGNELCGKPLEACPGSNNGGGGSHKKKNKLSGGAIAGIVIGSVIGAILILLLLFLLCRKSRKTDSRDVSAAAPPKSVEVADVARDGGGASGSSAVAGSKVESKSNGGGAKSLVFFGDVNRPFDLEELLRASAEVLGKGTFGTTYKATMDLGISVAVKRLKDVTLPEREFREKIEQVGKMVHENLVPLRGYYFSKDEKLVVYDYMPMGSLSALLHANNGAGRTPLNWETRSAIALGAARGVAYLHSQGPTSSHGNIKSSNILLTKSFEARVSDFGLAHLALPTATPNRISGYRAPEVTDSRKVSQKADVYSFGIMLLELLTGKAPTHSSLNEDGVDLPRWVQSVVQDEWNTEVFDVELLRYQNIEDEMVKLLQLALECTAQYPDKRPSMEVVESRIQEISRSSLEKEEEEEKNEFSQQYYSVDSGPPQA* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0543 640 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524
Amo17g0543 640 SUPERFAMILY L domain-like 48 208 - -
Amo17g0543 640 MobiDBLite consensus disorder prediction 610 627 - -
Amo17g0543 640 Gene3D Ribonuclease Inhibitor 137 225 IPR032675 -
Amo17g0543 640 Gene3D Transferase(Phosphotransferase) domain 1 416 635 - -
Amo17g0543 640 Pfam Protein tyrosine and serine/threonine kinase 345 605 IPR001245 GO:0004672|GO:0006468
Amo17g0543 640 PANTHER INACTIVE RECEPTOR KINASE-RELATED 7 621 - -
Amo17g0543 640 ProSiteProfiles Protein kinase domain profile. 341 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g0543 640 Gene3D Phosphorylase Kinase; domain 1 307 415 - -
Amo17g0543 640 PANTHER OS05G0588300 PROTEIN 7 621 - -
Amo17g0543 640 MobiDBLite consensus disorder prediction 294 318 - -
Amo17g0543 640 MobiDBLite consensus disorder prediction 610 640 - -
Amo17g0543 640 Pfam Leucine rich repeat N-terminal domain 25 60 IPR013210 -
Amo17g0543 640 CDD STKc_IRAK 347 610 - -
Amo17g0543 640 SUPERFAMILY Protein kinase-like (PK-like) 345 604 IPR011009 -
Amo17g0543 640 Gene3D Ribonuclease Inhibitor 27 136 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0543 Amo-Chr17 10993467 10996706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0543 23 610 Receptor kinase-like Gene Family AT1G48480 58.252 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Amo17g0543 PK_Tyr_Ser-Thr 2.3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0543 - - aprc:113846223 846.269