Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0513 ATGGCAACCGAAGAGGTTAATAAGCCTCCATCACTTCCTCCTTATCCTGAGATGATAATGGAGGCATTGGACGGACTCAATGAACCAAATGGATCCAACAAATCAGCCATATCGAGGTACATAGAGTCCACTTATGGAGAATTACCAGAGGGACACACAACACTCCTCAATCACCACCTCAACAAGATGAAAGACAGTGGGGAGCTTGTGTTCTTGAAGAACAACTACATGAAACCTGACGCTAGTGCGCCACCAAAAAGAGGCCGTGGAAGGCCGCCGAAGGCAAAGGAGCCACTTCCTCCGGGAACCGTTTTGTCACCACCAAGGCCAAGGGGAAGGCCACCAAAGGATCCAAATGCACCACCAAAGTCACCGAAAGCAAAGCCTTCAGGTGGAAGTGGTAGGCCTAGAGGAAGGCCTAAGAAGATTCCCCGGACAGCGGCGCCGCCTCCACCGTCGCCGTTGAGTGCTCCTTCTACCCCTAGGGGTAGGGGTAGGCCTCCAAAGGTGAAGCCTCAATTGACAGAAGTGAGTGTTGAGATATAG 546 0.5183 MATEEVNKPPSLPPYPEMIMEALDGLNEPNGSNKSAISRYIESTYGELPEGHTTLLNHHLNKMKDSGELVFLKNNYMKPDASAPPKRGRGRPPKAKEPLPPGTVLSPPRPRGRPPKDPNAPPKSPKAKPSGGSGRPRGRPKKIPRTAAPPPPSPLSAPSTPRGRGRPPKVKPQLTEVSVEI* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0513 181 Pfam linker histone H1 and H5 family 13 74 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo17g0513 181 SMART h15plus2 9 75 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo17g0513 181 MobiDBLite consensus disorder prediction 95 125 - -
Amo17g0513 181 PANTHER HMG-Y-RELATED PROTEIN A 1 177 IPR031059 GO:0003677|GO:0005634
Amo17g0513 181 PANTHER HISTONE H1 1 177 - -
Amo17g0513 181 PRINTS AT-hook-like domain signature 86 96 IPR017956 GO:0003677
Amo17g0513 181 PRINTS AT-hook-like domain signature 106 117 IPR017956 GO:0003677
Amo17g0513 181 PRINTS AT-hook-like domain signature 132 142 IPR017956 GO:0003677
Amo17g0513 181 Pfam AT hook motif 134 143 IPR017956 GO:0003677
Amo17g0513 181 Pfam AT hook motif 86 97 IPR017956 GO:0003677
Amo17g0513 181 Pfam AT hook motif 108 119 IPR017956 GO:0003677
Amo17g0513 181 Pfam AT hook motif 161 172 IPR017956 GO:0003677
Amo17g0513 181 Gene3D - 7 93 IPR036388 -
Amo17g0513 181 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 11 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo17g0513 181 SUPERFAMILY "Winged helix" DNA-binding domain 8 87 IPR036390 -
Amo17g0513 181 MobiDBLite consensus disorder prediction 75 181 - -
Amo17g0513 181 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Amo17g0513 181 SMART AT_hook_2 134 146 IPR017956 GO:0003677
Amo17g0513 181 SMART AT_hook_2 161 173 IPR017956 GO:0003677
Amo17g0513 181 SMART AT_hook_2 108 120 IPR017956 GO:0003677
Amo17g0513 181 MobiDBLite consensus disorder prediction 143 158 - -
Amo17g0513 181 PRINTS High mobility group protein (HMGY) signature 110 121 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Amo17g0513 181 PRINTS High mobility group protein (HMGY) signature 123 142 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Amo17g0513 181 PRINTS High mobility group protein (HMGY) signature 99 110 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Amo17g0513 181 PRINTS High mobility group protein (HMGY) signature 84 96 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0513 Amo-Chr17 10072754 10074722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0513 18 82 Single Myb Histone (SMH) Gene Family AT1G49950 38.462 7.10e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0513 - - gmx:100793697 194.512