Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0510 ATGAAATGGGGGCGAAGGTCTGGAATAAGATTTCCAGAAGATAGACCTGCAAGTGCTTCTAAGAGCCATAGCCAAGCAGAGAAAAGAAGAAGGGACAGAATCAATGCACAGCTTGCAACTCTTAGAAAACTGATTCCTAAGTCTGATAAAATGGACAAGGCTGCATTACTAGGGAGTGTAGTAGATCATGTAAAGGATCTAAAGTGA 207 0.4155 MKWGRRSGIRFPEDRPASASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVVDHVKDLK* 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0510 68 PANTHER TRANSCRIPTION FACTOR BHLH30 13 68 IPR045847 GO:0003700|GO:0006355
Amo17g0510 68 SMART finulus 24 68 IPR011598 GO:0046983
Amo17g0510 68 Gene3D - 13 68 IPR036638 GO:0046983
Amo17g0510 68 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 18 67 IPR011598 GO:0046983
Amo17g0510 68 PANTHER TRANSCRIPTION FACTOR BHLH51 13 68 - -
Amo17g0510 68 Pfam Helix-loop-helix DNA-binding domain 21 67 IPR011598 GO:0046983
Amo17g0510 68 MobiDBLite consensus disorder prediction 1 33 - -
Amo17g0510 68 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 67 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0510 Amo-Chr17 10002936 10005095 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0510 8 68 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 55.882 2.84e-18 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo17g0510 HLH 4.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0510 - - adu:107485656 115.161