Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0500 ATGATGAGGTTCTCCCAAGGAATCTCCACTGATACAAGGGACCAAGATTCTCACTTCAAGAACCTCAAAGACAGAAACTTTTTGGGAAAACTGATATGGGACTTTGCATTTGCATGTGTTGCTTCGCCATGCACTTGTAGCAGTGGAAAAATCGATGGCAAAGAATTCAAAAACATAACTTTGGATCACAAGAAGGCTCTGTTGCTGGCAGAATCTAATGGGGTTGGAGCAGAATTGCTGAACAATGAACCTCAATCGGTTCATTCATCTTTCAGGTTCAGCTTCCGTTCTCAGGTTGAGCTAGAATCCTTCAACATGAGTTCTTCTTCTGCTGCTGCTGCTAAGGCAGCCTTGTTGATGGTGAATTTGGAGTGTGAGTCTCTGAAATGGAGGACAATGGAGCCATTGGAGAAGAGCATATCCCCAGTGCCCAACACTTTGATCAGGTTCAATTATCATGAAATTGTGCATGCTACTCGCAATTTCTCCAAAGGTAGAGTGTTGGGAAGAGGGGCATTGAGCTGTGTTTTTAGGGGTAAAGTTGGTATATTGAGGACAACTGTTGCAATCAAAAGGTTGGACAAAGAAGACAGAGAGTGTGCCAAGGCCTTTTGCAGAGAGTTGATGATTGCAAGTTCTCTTCACAACACAAACATTGTGCCTCTTTTGGGATTTTGCATTGATTCAGAGGAAGGCTTGTTTTTGGTCTACAAATTTGTTTCAGGAGGAAGCTTAGAGCATCACTTGCATGGGAGGAAGAAAAGTAGAGGTTCACCACTTCCATGGTCTGTGAGATTTAAAGTTGCAATTGGGATTGCAAAGGCCATAGCTTATTTGCATTATGGAACTGAAAGATGTGTTGTTCATAGAGATATTAAGCCTTCAAACATTTTGCTTTCCTCTAAGAAAATTCCCAAGTTATGTGATTTTGGACTAGCTACATGGACTGTTGCACCTTCAGTACCTTTTCTATGCAAAGCTGCCAAAGGAACATTTGGTTATTTGGCCCCTGAATATTTTCAACATGGAAAGGTGTCAGATAAGACTGATGTTTATGCTTTTGGAGTGGTTTTATTAGAACTCATAACTGGCAGGAAGCCAATTGAAGCAAAGAGGACTCAAGGAGAAGAGAACTTGGTCTCATGGGCTAAAGCTTTGCTACAGAAAGGGAAATTAGCTATTGAAAAGTTGGTTGATCCTCAACTCCAYTATAGCARTTCGAGATTCTCGAGTCAAATAGCTCGGATGATCGAAGCGGCGGCTGCTTGTATTACATTCGAAGAATCTAGAAGGCCCGGCATATACGAGATTCTTGCRATACTAAAAGGTGAACAAGAACTTGTTCTCTCYAGGAGGAGGAAGTCTGGTTACTACACACAGTTACAACAAAATAATAGTGATTTGAAAAGTCACTTGGCTTTGGCAATGCTTGGAGTATCAGAGTTTGATGATGATGATGATGATTATCTTTCTTGCCGCTAA 1482 0.413 MMRFSQGISTDTRDQDSHFKNLKDRNFLGKLIWDFAFACVASPCTCSSGKIDGKEFKNITLDHKKALLLAESNGVGAELLNNEPQSVHSSFRFSFRSQVELESFNMSSSSAAAAKAALLMVNLECESLKWRTMEPLEKSISPVPNTLIRFNYHEIVHATRNFSKGRVLGRGALSCVFRGKVGILRTTVAIKRLDKEDRECAKAFCRELMIASSLHNTNIVPLLGFCIDSEEGLFLVYKFVSGGSLEHHLHGRKKSRGSPLPWSVRFKVAIGIAKAIAYLHYGTERCVVHRDIKPSNILLSSKKIPKLCDFGLATWTVAPSVPFLCKAAKGTFGYLAPEYFQHGKVSDKTDVYAFGVVLLELITGRKPIEAKRTQGEENLVSWAKALLQKGKLAIEKLVDPQLHYSXSRFSSQIARMIEAAAACITFEESRRPGIYEILAILKGEQELVLSRRRKSGYYTQLQQNNSDLKSHLALAMLGVSEFDDDDDDYLSCR* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0500 493 Gene3D Transferase(Phosphotransferase) domain 1 240 462 - -
Amo17g0500 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 287 299 IPR008271 GO:0004672|GO:0006468
Amo17g0500 493 PANTHER SERINE/THREONINE-PROTEIN KINASE CDL1 11 489 - -
Amo17g0500 493 SMART serkin_6 162 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g0500 493 PANTHER OS01G0750732 PROTEIN 11 489 - -
Amo17g0500 493 Gene3D Phosphorylase Kinase; domain 1 147 239 - -
Amo17g0500 493 SUPERFAMILY Protein kinase-like (PK-like) 150 455 IPR011009 -
Amo17g0500 493 Pfam Protein kinase domain 163 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g0500 493 ProSiteProfiles Protein kinase domain profile. 162 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0500 Amo-Chr17 9856487 9859451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0500 150 469 Trihelix Transcription Factor Family AT1G70460 41.265 3.28e-68 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Amo17g0500 Pkinase 4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0500 - - adu:107481060 661.759