Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0482 ATGGAGGGTGCTGGTCCTAGTGGTTGTAGTGGAGAGGACTTTGAAGAGGACGTGGCAACGTCGGTGCCTGCGGCCGTACGACGGGCGCTGCAGCTGCTGGAGGAGGACGACGCTGACCTGAGGATACAGGCCGCCTGCGACATCCGCCGCCTCACCAAGAAATCACCGTGCTGCCGCCGACAGCTCCGCCACGCCGTCCGCCCGCTTGTCTCAATGCTCCGAGTTGACTCGTCCGAGTCACGCGAGTCCGCCCTTCTCGCCTTGCTTAACCTTGCCGTCAAAGATGAAAAGAACAAAGTTAGCATTGTAGAAGCAGGTGCATTAGAACCTATAGTAAGTTTCCTAAAGTCACAAAATCCAAACATGCAAGAATATGCAAGTGCATCATTGCTCACTCTCTCTGCCTCTGCAACCAACAAACCAATTATCACTTCTTCTGGTGCCATTCCTCTTCTAGTAAAGATTCTAAGAGATGGAACACCACAAGCTAAAGCTGATTCATTAATGGCCCTCTCCAATTTATCAACACACTCTGATAACCTCGACATCATCCTCGAAACCAATCCGGTCGCTTCAATAATCCGCCTTCTCAAACCATGCAAGAAATCTTCGAAAACAGCAGAGAAATGCTGTGCTTTGGTAGAGTCATTGGTTGGTTATGACAAGTGCCGGACTGCGCTAACATGCGAAGAAGGCGGGGTTCTGGCAATTGTTGAAGTTCTTGAGAGTGGAACAAAGCAGGGTAAGGAACATGCTGTTGGAGCATTATTGAAAATGTGCGAGAGTGATAGGTGTAAATACAGAGAACCAATCCTAAGGGAAGGTGTTATTCCTGGACTTCTTGAACTCACAGTTCAAGGGACGGAAAAGTCTCAGCCAAAAGCACACACCCTTTTGCAATTACTTAGAGAATCACCTAATCCAAGATCAGAAACTGAGCCTAACACAATAGAGAACATAGTTTGCAACCTCATATCACAAATTGATGGGAAAGATGACCAAGCTGATGGTAAAGCTAAGAAGATGCTGGCAGAGATGGTCCAAGTCAGCATGGAAAGAAGTTTGAGACACTTACAACAAAGAGCAGCACTTGTATCCACCCCAAGTGATTTATCTATTACTAGTTGTGCTTCTCAGGTTTCTTTAAATTGGTAG 1155 0.4701 MEGAGPSGCSGEDFEEDVATSVPAAVRRALQLLEEDDADLRIQAACDIRRLTKKSPCCRRQLRHAVRPLVSMLRVDSSESRESALLALLNLAVKDEKNKVSIVEAGALEPIVSFLKSQNPNMQEYASASLLTLSASATNKPIITSSGAIPLLVKILRDGTPQAKADSLMALSNLSTHSDNLDIILETNPVASIIRLLKPCKKSSKTAEKCCALVESLVGYDKCRTALTCEEGGVLAIVEVLESGTKQGKEHAVGALLKMCESDRCKYREPILREGVIPGLLELTVQGTEKSQPKAHTLLQLLRESPNPRSETEPNTIENIVCNLISQIDGKDDQADGKAKKMLAEMVQVSMERSLRHLQQRAALVSTPSDLSITSCASQVSLNW* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0482 384 SUPERFAMILY ARM repeat 28 324 IPR016024 -
Amo17g0482 384 SMART arm_5 95 135 IPR000225 GO:0005515
Amo17g0482 384 SMART arm_5 54 93 IPR000225 GO:0005515
Amo17g0482 384 SMART arm_5 177 219 IPR000225 GO:0005515
Amo17g0482 384 SMART arm_5 220 261 IPR000225 GO:0005515
Amo17g0482 384 SMART arm_5 136 176 IPR000225 GO:0005515
Amo17g0482 384 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 106 148 IPR000225 GO:0005515
Amo17g0482 384 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 147 189 IPR000225 GO:0005515
Amo17g0482 384 Gene3D - 16 115 IPR011989 -
Amo17g0482 384 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 19 353 - -
Amo17g0482 384 PANTHER U BOX DOMAIN-CONTAINING 19 353 - -
Amo17g0482 384 Pfam Armadillo/beta-catenin-like repeat 96 130 IPR000225 GO:0005515
Amo17g0482 384 Gene3D - 225 366 IPR011989 -
Amo17g0482 384 Gene3D - 116 224 IPR011989 -
Amo17g0482 384 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 64 106 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0482 Amo-Chr17 9416011 9420101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0482 4 303 U-box Gene Family AT2G23140 33.444 6.39e-40 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0482 - - aip:107606755 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0482 17 9416011 9420101 Amo17g0482 17 9416011 9420101 ECH
Amo17g0482 17 9416011 9420101 Amo07g0618 07 7655206 7659998 hybridization