Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0481 ATGACCACCAAGGCTGAAAGCATCCACGAAGAAGAGATGTCAAACATGGAAGAAGGTGAAAGTGTAACCAATTGCATGCAATTATGTTGTTCATCAAACTATGTGGTAACCTTGGCACAGAAGGTGATTGCGGAAGCAATAGGGACATATTTTGTGGTATTTGCTGGGTGTGGTGCTGTAGCAGTGAATAAGATATATGGCTCTGTCACGTTTCCAGGCATTGCCATAACATGGGGTATGATTGTTATGGTCATGGTTTATTCTGTTGGTCATGTCTCTGGAGCTCACTTCAACCCTGCTGTTACAATCACTTGTGCCATCTTTCGCCGAATCCCTCTTAAAGAGGTGCCACTGTACATTGTAGCTCAATTAGTGGGATCTTTGCTAGCTAGTGGCACATTGGTCCTCCTTCTTGATATTACACCAAAGGCTTATTTTGGAACCGTACCAGCTGGATCCACCAGCCAGGCCTTGGTTGCCGAAATCATCATCACCTTTCTCTTGATGTTTGTCATCTCTGCCGTTTCCACGGATGATAGAGCGGTAGGTCACTTGAATGGAGTTGCAGTTGGAATGACCATAATGTTGAATGTCTTCGTTGCAGGGCCAGTGTCAGGAGCTTCGATGAACCCAGCAAGAAGTATTGGTCCTGCTCTTGTGAAACATGTTTACAAAGGGTTATGGGCATACATAGTTGGTCCAATTGTTGGAGCCATAGCAGGAGCATTTATTTATAACTTTCTTAGAGCCATAGACAAACCAAAAAGGAGAGAAGAGATAGGCAATTCTTAA 792 0.4394 MTTKAESIHEEEMSNMEEGESVTNCMQLCCSSNYVVTLAQKVIAEAIGTYFVVFAGCGAVAVNKIYGSVTFPGIAITWGMIVMVMVYSVGHVSGAHFNPAVTITCAIFRRIPLKEVPLYIVAQLVGSLLASGTLVLLLDITPKAYFGTVPAGSTSQALVAEIIITFLLMFVISAVSTDDRAVGHLNGVAVGMTIMLNVFVAGPVSGASMNPARSIGPALVKHVYKGLWAYIVGPIVGAIAGAFIYNFLRAIDKPKRREEIGNS* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0481 263 PANTHER AQUAPORIN NIP4-1-RELATED 13 256 - -
Amo17g0481 263 PANTHER AQUAPORIN NIP2-1 13 256 IPR034294 -
Amo17g0481 263 CDD MIP 40 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo17g0481 263 Pfam Major intrinsic protein 36 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo17g0481 263 ProSitePatterns MIP family signature. 96 104 IPR022357 -
Amo17g0481 263 TIGRFAM MIP: MIP family channel proteins 44 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo17g0481 263 SUPERFAMILY Aquaporin-like 36 254 IPR023271 -
Amo17g0481 263 Gene3D Glycerol uptake facilitator protein. 2 260 IPR023271 -
Amo17g0481 263 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo17g0481 263 PRINTS Major intrinsic protein family signature 78 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo17g0481 263 PRINTS Major intrinsic protein family signature 115 134 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo17g0481 263 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo17g0481 263 PRINTS Major intrinsic protein family signature 191 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo17g0481 263 PRINTS Major intrinsic protein family signature 228 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0481 Amo-Chr17 9413647 9415721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0481 1 257 Major Intrinsic Protein MIP AT5G37820 63.985 1.94e-120 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0481 K09874 - gmx:100803763 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0481 17 9413647 9415721 Amo17g0481 17 9413647 9415721 ECH