Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0473 ATGGGTTGCTGCTTCAGTGCAAAGATCAAAGCTGAGAGCCCTCCACGCCATGGTGTGAGTTCAAAGGATGGTAGCAGAGAAGATGGTTTGAGTGGTTTAAGCAGCAAAGTCTCGACCACTGCTCCTCCGACTCCTCGGTCAGAAGGAGAGATCTTGAAATCCTCGAATTTGAAGAGCTTCACCTTTGCTGAACTTAAAACCGCTACGAGGAACTTTCGTCCGGATAGTGTGATAGGAGAAGGTGGTTTTGGTTCTGTATTCAAGGGGTGGATTGATGAGCAGACACTTGTACCGGTTAAACCCGGTACTGGAATGGTCATTGCTGTGAAGAGGCATAACCAAGAAGGTGGACAAGGACACAGTGAATGGTTGACCGAGATAAATTACCTGGGGCAGCTGCGTCATCCTAATCTTGTGAAACTGGTTGGTTATTGCTTGGAAGATGATCAAAGGCTTTTGGTGTATGAGTTCTTGACCAAGTGTAGTTTGGATAATCACTTATTTAGGAGGGCTTCTTATGTTGAGCCGCTTCCTTGGAACATTCGGATAAAGGTTGCCCTTGATGCTGCTAAGGGTCTGGCATATCTCCACAGCGACGAAGCAAAAGTGATATTCAGAGACTTCAAAACTTCTAATATATTGCTTGATTCGAATTATAATGCGAAACTTTCTGATTTCGGCTTGGCAAAGGATGGACCAGCAGGTGATAAGAGCCATGTCTCTACAAGGGTGATGGGCACATACGGTTATGCTGCACCTGAATACATGGCCACAGGTCACTTGACCAAGAAGAGTGATGTATACAGCTTCGGAGTTGTTCTCCTAGAAATCATGTCGGGTAAGCGCGCCCTCGACAACAACAGGCCATCCCGGGAGCAGAACTTGATTGAATGGGCCAAACCTTACCTCAGCAGCAAGCGCAGGATCTTCCAAGTCATGGATGCTCGAATCGAAGGCCAATACACGCTGCGCGAGGTGATGAAATTAGCTAACCTCGCCATCAAATGCCTATCGGTCGAGCCGAGGTTTCGGCCGAAGATGGATGAGGTGGTGAGGACATTGGAGCACCTGCATGATTCCGACGGAGAGGGATGCTCTAGAGATCAAGATTTGAAAAGGAATGGTCATAGACATAGCTCAGGAAGCAGTGGTACTAAACAACATAGAAGAAAGCATGAAACAATTACGACAACCATGCAAAAAGAATGA 1209 0.4682 MGCCFSAKIKAESPPRHGVSSKDGSREDGLSGLSSKVSTTAPPTPRSEGEILKSSNLKSFTFAELKTATRNFRPDSVIGEGGFGSVFKGWIDEQTLVPVKPGTGMVIAVKRHNQEGGQGHSEWLTEINYLGQLRHPNLVKLVGYCLEDDQRLLVYEFLTKCSLDNHLFRRASYVEPLPWNIRIKVALDAAKGLAYLHSDEAKVIFRDFKTSNILLDSNYNAKLSDFGLAKDGPAGDKSHVSTRVMGTYGYAAPEYMATGHLTKKSDVYSFGVVLLEIMSGKRALDNNRPSREQNLIEWAKPYLSSKRRIFQVMDARIEGQYTLREVMKLANLAIKCLSVEPRFRPKMDEVVRTLEHLHDSDGEGCSRDQDLKRNGHRHSSGSSGTKQHRRKHETITTTMQKE* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0473 402 MobiDBLite consensus disorder prediction 27 50 - -
Amo17g0473 402 Gene3D Transferase(Phosphotransferase) domain 1 159 379 - -
Amo17g0473 402 Gene3D Phosphorylase Kinase; domain 1 47 157 - -
Amo17g0473 402 MobiDBLite consensus disorder prediction 386 402 - -
Amo17g0473 402 ProSiteProfiles Protein kinase domain profile. 72 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g0473 402 SUPERFAMILY Protein kinase-like (PK-like) 44 354 IPR011009 -
Amo17g0473 402 MobiDBLite consensus disorder prediction 10 50 - -
Amo17g0473 402 CDD STKc_IRAK 78 357 - -
Amo17g0473 402 MobiDBLite consensus disorder prediction 357 377 - -
Amo17g0473 402 PANTHER KINASE 1B 26 393 - -
Amo17g0473 402 MobiDBLite consensus disorder prediction 357 402 - -
Amo17g0473 402 ProSitePatterns Protein kinases ATP-binding region signature. 78 110 IPR017441 GO:0005524
Amo17g0473 402 Pfam Protein tyrosine and serine/threonine kinase 76 354 IPR001245 GO:0004672|GO:0006468
Amo17g0473 402 PANTHER OS01G0588500 PROTEIN-RELATED 26 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0473 Amo-Chr17 9215750 9218804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0473 50 357 Glycoside Hydrolase AT3G07070 49.677 7.97e-103 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Amo17g0473 PK_Tyr_Ser-Thr 2.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0473 - - gmx:100775335 664.455