Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo17g0471 | ATGCGGAGGCACAGTCCAGGATACTACAGTCCGCCTAGGAGAGGGTACGGCGGCAGGGGAAGATCTCCTCCGCCGCCACCTCCTCCGTCGAGGAGGGGCTACGGTGGTGGTGGCGGCGGCGGCGGGAGGCGCGGCAGGGATAACAACAACAATGGAAGCCTTCTTGTTCGCAACATTCCCCTCGATTGCCGACCCGAGGAGCTTCGAGTCCCCTTCGAGCGGTTCGGACCCGTTCGTGATGTCTACATTCCCAAGGATTATTACTCAGGAGAACCTCGAGGCTTTGCGTTTGTGCAATTTGTGGATTCTTATGATGCTTCAGAGGCACAGTACCATATGAACAGACAAATCTTTGCCGGAAGGGAAATATCCGTTGTTGTCGCTGCTGAAACAAGAAAAAGACCAGAGGAAATGCGCCAAAGGACTAGGAGGACCAGCGAACTATGGGGGGAGAAGGTCGCTCGCGCTCTCGCTCAGTATCACGCTCTCCACCTTATCACTCTGGTTCTAGAAGTAGATATCGCTCAAGATCATATTCTCCTGCTCCAAGAAGGCAAAGTGATTACTCTATTTCCCCTAGAAGGCAAGCAGAACACTCTAGATCACCTCGATCACCAAGAGGCCCCCCTAGAGAGCGAGATGCTGATCAGAAGCGCAGATCATATACTCCAGATTTTGGCAATGGTGTTGATCAGAATCAAAACAATGGATATCCTGAGAAATCTACATACAAGTCTGAGGCCGATGAAGGCCAGTGGAAGTCATCTGGACGTAGACCATCGAGGTCACCACCTGGATCCAGATCTAGGTCAAGGTCTCCTGATTTGTCTCCTAGACATTGAAGACGAGGTAAAATGTCTTTGGCAATGTGATGCATTCTGCTGA | 885 | 0.5153 | MRRHSPGYYSPPRRGYGGRGRSPPPPPPPSRRGYGGGGGGGGRRGRDNNNNGSLLVRNIPLDCRPEELRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDSYDASEAQYHMNRQIFAGREISVVVAAETRKRPEEMRQRTRRTSELWGEKVARALAQYHALHLITLVLEVDIAQDHILLLQEGKVITLFPLEGKQNTLDHLDHQEAPLESEMLIRSADHILQILAMVLIRIKTMDILRNLHTSLRPMKASGSHLDVDHRGHHLDPDLGQGLLICLLDIEDEVKCLWQCDAFC* | 295 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo17g0471 | 294 | MobiDBLite | consensus disorder prediction | 1 | 56 | - | - | |
Amo17g0471 | 294 | SUPERFAMILY | RNA-binding domain, RBD | 8 | 128 | IPR035979 | GO:0003676 | |
Amo17g0471 | 294 | PANTHER | OS02G0252100 PROTEIN | 29 | 143 | - | - | |
Amo17g0471 | 294 | SMART | rrm1_1 | 53 | 126 | IPR000504 | GO:0003723 | |
Amo17g0471 | 294 | Gene3D | - | 43 | 156 | IPR012677 | - | |
Amo17g0471 | 294 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 52 | 130 | IPR000504 | GO:0003723 | |
Amo17g0471 | 294 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 54 | 123 | IPR000504 | GO:0003723 | |
Amo17g0471 | 294 | MobiDBLite | consensus disorder prediction | 18 | 32 | - | - | |
Amo17g0471 | 294 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 29 | 143 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo17g0471 | Amo-Chr17 | 9185075 | 9187325 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo17g0471 | 27 | 114 | Eukaryotic Initiation Factors Gene Family | AT3G11400 | 37.500 | 5.42e-08 | 51.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo17g0471 | K12900 | - | gmx:100804294 | 190.274 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Amo17g0471 | 17 | 9185075 | 9187325 | Amo17g0471 | 17 | 9185075 | 9187325 | ECH | |
Amo17g0471 | 17 | 9185075 | 9187325 | Amo07g0624 | 07 | 7788543 | 7790807 | hybridization |