Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0471 ATGCGGAGGCACAGTCCAGGATACTACAGTCCGCCTAGGAGAGGGTACGGCGGCAGGGGAAGATCTCCTCCGCCGCCACCTCCTCCGTCGAGGAGGGGCTACGGTGGTGGTGGCGGCGGCGGCGGGAGGCGCGGCAGGGATAACAACAACAATGGAAGCCTTCTTGTTCGCAACATTCCCCTCGATTGCCGACCCGAGGAGCTTCGAGTCCCCTTCGAGCGGTTCGGACCCGTTCGTGATGTCTACATTCCCAAGGATTATTACTCAGGAGAACCTCGAGGCTTTGCGTTTGTGCAATTTGTGGATTCTTATGATGCTTCAGAGGCACAGTACCATATGAACAGACAAATCTTTGCCGGAAGGGAAATATCCGTTGTTGTCGCTGCTGAAACAAGAAAAAGACCAGAGGAAATGCGCCAAAGGACTAGGAGGACCAGCGAACTATGGGGGGAGAAGGTCGCTCGCGCTCTCGCTCAGTATCACGCTCTCCACCTTATCACTCTGGTTCTAGAAGTAGATATCGCTCAAGATCATATTCTCCTGCTCCAAGAAGGCAAAGTGATTACTCTATTTCCCCTAGAAGGCAAGCAGAACACTCTAGATCACCTCGATCACCAAGAGGCCCCCCTAGAGAGCGAGATGCTGATCAGAAGCGCAGATCATATACTCCAGATTTTGGCAATGGTGTTGATCAGAATCAAAACAATGGATATCCTGAGAAATCTACATACAAGTCTGAGGCCGATGAAGGCCAGTGGAAGTCATCTGGACGTAGACCATCGAGGTCACCACCTGGATCCAGATCTAGGTCAAGGTCTCCTGATTTGTCTCCTAGACATTGAAGACGAGGTAAAATGTCTTTGGCAATGTGATGCATTCTGCTGA 885 0.5153 MRRHSPGYYSPPRRGYGGRGRSPPPPPPPSRRGYGGGGGGGGRRGRDNNNNGSLLVRNIPLDCRPEELRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDSYDASEAQYHMNRQIFAGREISVVVAAETRKRPEEMRQRTRRTSELWGEKVARALAQYHALHLITLVLEVDIAQDHILLLQEGKVITLFPLEGKQNTLDHLDHQEAPLESEMLIRSADHILQILAMVLIRIKTMDILRNLHTSLRPMKASGSHLDVDHRGHHLDPDLGQGLLICLLDIEDEVKCLWQCDAFC* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0471 294 MobiDBLite consensus disorder prediction 1 56 - -
Amo17g0471 294 SUPERFAMILY RNA-binding domain, RBD 8 128 IPR035979 GO:0003676
Amo17g0471 294 PANTHER OS02G0252100 PROTEIN 29 143 - -
Amo17g0471 294 SMART rrm1_1 53 126 IPR000504 GO:0003723
Amo17g0471 294 Gene3D - 43 156 IPR012677 -
Amo17g0471 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 130 IPR000504 GO:0003723
Amo17g0471 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 123 IPR000504 GO:0003723
Amo17g0471 294 MobiDBLite consensus disorder prediction 18 32 - -
Amo17g0471 294 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 29 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0471 Amo-Chr17 9185075 9187325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0471 27 114 Eukaryotic Initiation Factors Gene Family AT3G11400 37.500 5.42e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0471 K12900 - gmx:100804294 190.274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0471 17 9185075 9187325 Amo17g0471 17 9185075 9187325 ECH
Amo17g0471 17 9185075 9187325 Amo07g0624 07 7788543 7790807 hybridization