Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0459 ATGGAGAATGGTGGTGAAATGATCAAAAAAACTAAAGGGAGACAAAAGATAGAGATAAAGAGGATTGAGAATAAAAAAAATTGTCAAATCTCTTTTACAAAGAGAAAAGATGGCTTACTGAAGAAAGCAAATGAATTAAAATCTTTATGTGATGCTGGTGTTGATTTGATCATATATTCTTCCAATGGAAAAGCCTATTATTATGGCGATTCTTCGTTAAAGACAATGAAAATGGCTCTCTCAAACGAACAACAACCTCAAGGTAGTAATCAGTTTCTTGGTTACATCATAGAGGGAATGTCTAGGATGGACATGCAAAATCTTATTAAAAAGAACGATTCACTTGTGGATCGATTAAATGTTGAGAAAGAACGAGCCGACACTCTTTCTAGAATTTTAAAAACAATTAAAAATGACAACAACATCACCAATTGGTGGGATACGATTGGTCAAAGTTGTGAAAAAAATAGAGAGATGGAAGAAATTCTTGTAGTTCTTCAGCAAACTTTGAAAAATCAAATTTCACTTAAGATGGTTGCAAATCAGGCTGCAGTTACGACTATAGCTGAGAGTGTGACATCTACATTTTATCATGGTGATCAAACCATGGATCAAGTTAATCCCGGAGTTATTGAATCATACCCTACTCATGGAAGTATGAGTACTTTTTCCAGCATAGCTTTTGCTACTGGTGTCAACCCTTTTGACGCTGCAAGAGAATTTGGTGACCAAAATGCTCCTGTTTGGTATCCATCATACCAACATCAACAAGGATATAATAGTCTATTTCTCTACGATGTAAGTAATAGGAATGGTATTGGGAGAAGCAGCGGCGGCGGCGATGACACTGGAAATCATCTTTACCATTCAAATTCTAACCATAACAATGGTGGAGGCTTTTTTGGTTTTCCATACCAAAATAATCCATTCAACAATGGTTATGGCCGCGGAGGATTCTTCTAA 963 0.3603 MENGGEMIKKTKGRQKIEIKRIENKKNCQISFTKRKDGLLKKANELKSLCDAGVDLIIYSSNGKAYYYGDSSLKTMKMALSNEQQPQGSNQFLGYIIEGMSRMDMQNLIKKNDSLVDRLNVEKERADTLSRILKTIKNDNNITNWWDTIGQSCEKNREMEEILVVLQQTLKNQISLKMVANQAAVTTIAESVTSTFYHGDQTMDQVNPGVIESYPTHGSMSTFSSIAFATGVNPFDAAREFGDQNAPVWYPSYQHQQGYNSLFLYDVSNRNGIGRSSGGGDDTGNHLYHSNSNHNNGGGFFGFPYQNNPFNNGYGRGGFF* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0459 320 Gene3D - 24 91 IPR036879 GO:0003677|GO:0046983
Amo17g0459 320 PANTHER SERUM RESPONSE FACTOR HOMOLOG 13 149 - -
Amo17g0459 320 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
Amo17g0459 320 SUPERFAMILY SRF-like 13 78 IPR036879 GO:0003677|GO:0046983
Amo17g0459 320 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 68 IPR002100 GO:0003677|GO:0046983
Amo17g0459 320 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Amo17g0459 320 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Amo17g0459 320 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Amo17g0459 320 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
Amo17g0459 320 Coils Coil 105 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0459 Amo-Chr17 8875387 8876946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0459 9 146 Type I MADS-box Gene Family AT3G04100 33.333 3.42e-19 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Amo17g0459 SRF-TF 6.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0459 - - ahf:112762769 492.656