Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0435 ATGAGTTTTGTATTCCGGGGAACAAGAGCGGACATAGAAAATGGATTTCCAGGATTTATGCCTGAGCGACGTGCATTGCGTGTTCATCCAGCACGTCCTAGTAATTCCAATTCACTCACTTTCCTCGTCACAGTTCTCTTGTTGTTCATGATACTTAACTCGCACCAGATGTCACCAAATTTTCTGCTCTGGCTGGTGCTTGGTGTTTTCTTAATGGCTACAATGTTGAGGATGTATGCAACATGTCAACAGCTTCAAGCACAGGCTCAAGCTCATGCAGCAGCAGCTAGTGGGCTTTTAGGCCACACTGAGCTGCGGTTGCATATGCCGCCATCAATTGCCCTTGCCACCAGAGGACGCCTACAAGGCCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGAGCTAGATTATGAAACACTAAGGGCTCTTGATTCTGATAATGTTCCTACTGCACCTTCCATGACCGAGGAAGAGATAAATGCACTTCCTGTACACAAATACAAGGTTTCTGGTCCACAAAACAGTGGCACTGGTTCCTCAATGCAACAGGGGTCATCTTCCACTCCTGCGGAGAAGAAGCAAGACAATTCAAATGTAGCTGGAAGCATGAAAGCCKCTGATGATGAGCTGACTTGCAGTGTATGTTTGGAGCAAGTTAACATTGGGGATGTACTTCGTAGCTTGCCCTGCTTGCATCAGTTTCATGCGAATTGCATTGATCCCTGGCTGCGACAACAAGGAACATGCCCTGTCTGCAAATTCAGAGCGGGATCTGGGTGGAATGAAAGTGGAGCTAATGATATTGCAGATATGGTTTGA 828 0.465 MSFVFRGTRADIENGFPGFMPERRALRVHPARPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDELDYETLRALDSDNVPTAPSMTEEEINALPVHKYKVSGPQNSGTGSSMQQGSSSTPAEKKQDNSNVAGSMKAXDDELTCSVCLEQVNIGDVLRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGSGWNESGANDIADMV* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0435 275 Pfam Ring finger domain 214 256 IPR001841 -
Amo17g0435 275 CDD RING-H2_PA-TM-RING 214 256 - -
Amo17g0435 275 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SDIR1 1 269 - -
Amo17g0435 275 PANTHER TARGET OF ERK KINASE MPK-1 1 269 - -
Amo17g0435 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 260 IPR013083 -
Amo17g0435 275 ProSiteProfiles Zinc finger RING-type profile. 215 256 IPR001841 -
Amo17g0435 275 SMART ring_2 215 255 IPR001841 -
Amo17g0435 275 SUPERFAMILY RING/U-box 209 259 - -
Amo17g0435 275 MobiDBLite consensus disorder prediction 150 205 - -
Amo17g0435 275 MobiDBLite consensus disorder prediction 173 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0435 Amo-Chr17 8466491 8470969 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0435 1 275 C3H Transcription Factor Family AT3G55530 76.703 4.16e-143 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0435 K16283 - gmx:100777936 451.055