Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0433 ATGTGTTTTGGAACCATTGAAGATGCAAATCAATTTTATCAGAATTATGCCAAGCGCGTTGGTTTTGTTACTAAGATAAGGTTTACCCGAAGAGTTGGTAAAGATAAGGTTCCTAAGAATCAAATGATCACTTGCAATAGGGAGGGGAAACGCAAGTCTAGAGTTTCACCAATAGAAAAGACCAACCCTAGAACCAACTACAATTGCCCCGCAAGGATTTCTATTAGGTTGAATAAGGAGGGTCTTTGGATTATATTGAAGGTGTGTTTGGATCATTCACATCCTTGTGATCCAGAGATGGCAAAACTGTTGACACATAATAGAGAGATGACTATGCACATGTGTCGAGTCATTGAGAGGAATGATGAAGCAGGTGTGAGACCAAGCAAAACATATCAAGTATTGGTGGGTGAAGCGGGGGGAATTAGCATATTGATATCTATGAAGAAAGACATTGTTGGGTTCCAATTTTTTTTTGACAACTTTTTTTGGGCTGGTATGAGATCCACACAACGAAAGCAACAAGAAAGGGAGGCTGATGTTGAAGACTATAAATCAATAATACCTTGTGCCACTAATTCCTTAATAGAGAAGCAATTTCAAGGTGCCTATACTAATGCAAAGTTTAAGGAAGTACAAAAACAATTTAGAAAGAAAGCAAATTGTATTTTGCACCTTATGAAAGCAGTTTCTACATCTAAAGTCTATTCTATTTTGGAGGATGTATCTACTTCTAAAGAGAGGGTTTATGAAGTTAACTACAATGCGGAAACGAAGGATATTACATGCATGTGTCAAATGTTTGAATCAAGAGGCATATTATGCCGTCATAGCTTGGTTGTCCTAGGGCATGAACGCGTGAGAGAAATTCCAAGAAGATACATTTTGGACTGCTGGAGCAAACTTGTGAAGCAAAGACATAGTGATATTAAGAGCAGCCATGATCCAAGTTTGTTGAATCCAAAAACAGAGAGGTTTGATGATTTATGCTCCCATTCAAACAGTGTTGCTCAATTTGCATCCCAAACAAAGGAAACAAGTGATATTTACATCGTTATCTTGATATGGCTATGGCAGTGTCAAAATCATGGTTTGAGTCAGCAAAAGGCTAGATCTGAAAAAGACAAGATGATTAAAAAAGAAAACCGAGCAAAGAAGAGGAAAAGTGAGATAACTGAAAAAGAGACTTTAGATGTAGAAACTACTTCCTTAAGGATAATAAACATATTGGAGATAGTCAAAGTCTCCCTTTCAACGAACAGCTTCAAGATGCTGGGATTTGAATCTGATTCAACGGGAGGATCAATGGGAGGATTCATGTCCTTATTGAATTCAATCCATTCATACCAATTCTCAAATGTCGATTGA 1368 0.3735 MCFGTIEDANQFYQNYAKRVGFVTKIRFTRRVGKDKVPKNQMITCNREGKRKSRVSPIEKTNPRTNYNCPARISIRLNKEGLWIILKVCLDHSHPCDPEMAKLLTHNREMTMHMCRVIERNDEAGVRPSKTYQVLVGEAGGISILISMKKDIVGFQFFFDNFFWAGMRSTQRKQQEREADVEDYKSIIPCATNSLIEKQFQGAYTNAKFKEVQKQFRKKANCILHLMKAVSTSKVYSILEDVSTSKERVYEVNYNAETKDITCMCQMFESRGILCRHSLVVLGHERVREIPRRYILDCWSKLVKQRHSDIKSSHDPSLLNPKTERFDDLCSHSNSVAQFASQTKETSDIYIVILIWLWQCQNHGLSQQKARSEKDKMIKKENRAKKRKSEITEKETLDVETTSLRIINILEIVKVSLSTNSFKMLGFESDSTGGSMGGFMSLLNSIHSYQFSNVD* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0433 455 PANTHER OS03G0843700 PROTEIN 1 109 - -
Amo17g0433 455 PANTHER OS03G0843700 PROTEIN 155 336 - -
Amo17g0433 455 Pfam SWIM zinc finger 250 283 IPR007527 GO:0008270
Amo17g0433 455 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 1 109 IPR031052 GO:0006355
Amo17g0433 455 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 155 336 IPR031052 GO:0006355
Amo17g0433 455 ProSiteProfiles Zinc finger SWIM-type profile. 250 286 IPR007527 GO:0008270
Amo17g0433 455 Pfam FAR1 DNA-binding domain 11 97 IPR004330 -
Amo17g0433 455 SMART 26again6 261 288 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0433 Amo-Chr17 8421194 8437803 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo17g0433 FAR1 1.1e-16 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0433 - - ahf:112778718 490.73