Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0412 ATGGCAAAGCGTTGGTGGGATGAAGAACCACCCCACAACACTCCAACAAGCAGCACCAACGGCGACCAAGACACCAACGATGGCGGCGATGACAATACCAACTCCAGCGCGGCGGAGCGAAGAGGAGGAAGAGGCCGCAGGCCACGAGGCCGGCCACCGGGGTCAAAGAACAAGCCAAAACAACCGCTAGTGGTTAAGGAGGAGCTCCCAAACGCCCTTCAAAGTCATATTCTAGAGATCAGCGACGGAGCAGACGTGGCTGATTCCCTTTCCACTTTTGCAACCCGTCGCCACCGTGGCGTTGCCGTGCTAAGCGGAACCGGCACTGTCACTGACGTCAATCTCGGGCAGCCCGCGGCGCCCGGAGGCATCGTTTCACTCCAAGGAACTTTCCAGATCCTTTCCCTCTCCGGTGCGATTCTTCCCCCGCCATCGCCGCCGAGCTCCACCGGACTAACGGTTTACCTCGCCGGAGTTCAAGGGGAGGTGGTTGGCGGTAGGGTGGTAGGACCGCTGGTGGCTTGTGGACCAGTGATGGTGGTTGCAGCAACGTTTGCTAATGCCACGTATGAAAGGCTACCGTTTGAGGAAGAAGAAGAAGAAGAAGATGAGGAAGAAGATGGAGTGATGCGGGTGCAGGTGGAGCCGCAGCAGGAGCAACAATCTGGTGTAAACGAAGGTTGTACTGAACCACCTGAACCACCACCACAACCACCACAGGTTTACAGTAATGCTCGTTCCGGTTTGTTCTCCGATAACAGTGAAATGGTGACGCATGATGATGTATTTTGGTAA 795 0.561 MAKRWWDEEPPHNTPTSSTNGDQDTNDGGDDNTNSSAAERRGGRGRRPRGRPPGSKNKPKQPLVVKEELPNALQSHILEISDGADVADSLSTFATRRHRGVAVLSGTGTVTDVNLGQPAAPGGIVSLQGTFQILSLSGAILPPPSPPSSTGLTVYLAGVQGEVVGGRVVGPLVACGPVMVVAATFANATYERLPFEEEEEEEDEEEDGVMRVQVEPQQEQQSGVNEGCTEPPEPPPQPPQVYSNARSGLFSDNSEMVTHDDVFW* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0412 264 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 12 227 - -
Amo17g0412 264 ProSiteProfiles PPC domain profile profile. 70 206 IPR005175 -
Amo17g0412 264 PIRSF ESCAROLA 4 262 IPR014476 GO:0003680
Amo17g0412 264 Gene3D - 74 205 - -
Amo17g0412 264 MobiDBLite consensus disorder prediction 193 264 - -
Amo17g0412 264 MobiDBLite consensus disorder prediction 194 209 - -
Amo17g0412 264 SUPERFAMILY AF0104/ALDC/Ptd012-like 71 199 - -
Amo17g0412 264 CDD DUF296 76 157 IPR005175 -
Amo17g0412 264 MobiDBLite consensus disorder prediction 1 65 - -
Amo17g0412 264 Pfam Plants and Prokaryotes Conserved (PCC) domain 75 186 IPR005175 -
Amo17g0412 264 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 12 227 IPR014476 GO:0003680
Amo17g0412 264 MobiDBLite consensus disorder prediction 11 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0412 Amo-Chr17 7702101 7702895 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0412 46 200 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 74.194 4.16e-67 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0412 - - gmx:100787100 223.787