Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0378 ATGACCGAAGAAGAAGACCGAGCATCTGTTGAACCAATCGCCGGCAATGGCGTCTCTCTTCCGCAAGAGCTCGTTGGAGGAGGAGGAGGTACGGCCGAGACGGAGCCAGCGGGACGCGATGCGGAGGTGACTGTAGTTGGTGACGGCAATAGTGGTGGTGGTGCTGCCGCGGGAAAAGTAAAGGGACCGTGGTCTCCGGAAGAGGATGCGGTACTGAGCCGATTGGTGGCGCAGTTCGGAGCGAGGAATTGGAGCATGATCGCGCGGGGAGTTCCAGGCAGGTCAGGGAAGTCATGCCGGCTCCGATGGTGTAACCAGCTGGATCCTTGTGTTAAACGCAAGCCTTTCACTGAGGAAGAAGATTGCATTATCGTATCAGCCCATACAATCCATGGAAACAAGTGGGCAGCTATTGCAAGGCTTCTTCCAGGTAGAACAGATAATGCGATCAAGAACCACTGGAACTCTACCCTAAAGCGCAGGTGTATGGAACAGGGAAGATATGTTCCTCCGCGTGTTGAAGCGATGGAAGATGGTAGCATTGAGAAAACAAAGGCATCCTCTGAAGAAACCCTGTCAGTTGGGGATATGAATTCATATCCTACACAAGTTAGAAATGTCGTTATGAATACTGAGATTAAACAGCACGAAGATAAACCTCCAACTACAAGAAATGATGTTTCCGAAGTGGAGCAAAATCCTACCCTTCATCGACCAGTAGCACGTATTAGTGCATTTAGTGTTTATAATCCTACAAGCAGGCCAACAAATGGATCATCAAGTTCAAAGATTCTGCCATTGCAAAGCCCTTTATTCCAACTACCCAAAGCAGTTGAAGGAGCCTGCAAATTATTTGATGGTATTGAATGTGAACCAATGGTTCCATTGCAATGTAGTCATGGATGCTGTGCACCAGAATCAGGGGGAAGCCATTCTCATGGTTCTTCGCTATTAGGTCCCGAGTTTGTTGACTATTTGGATTCTCCCCCTTTCTTAAGTCATGAACTGATTTCCATAGCTACAGACCTAAATAACATTGCATGGATCAAGAGTGGCCTTGAGAACCATGGAGGTGCCAAAGTAACCGATAATGCCGCAAACTTGACAGGATCACAGGGGGCTGCTACTGTTTCTCAAACGGGCTTCTTAGGCCAAGGCCAAAAGAATGACTTCATGCAAATGCAATATGAGGAGGGACCAGGAAAGGTCATGTTTCTGGGTACAAATACAATGAAAGAAATGTTATCATCGAAGATGCCTCGGCAACATTTCGCAATGCCTGCAGAAGTTTGA 1293 0.4749 MTEEEDRASVEPIAGNGVSLPQELVGGGGGTAETEPAGRDAEVTVVGDGNSGGGAAAGKVKGPWSPEEDAVLSRLVAQFGARNWSMIARGVPGRSGKSCRLRWCNQLDPCVKRKPFTEEEDCIIVSAHTIHGNKWAAIARLLPGRTDNAIKNHWNSTLKRRCMEQGRYVPPRVEAMEDGSIEKTKASSEETLSVGDMNSYPTQVRNVVMNTEIKQHEDKPPTTRNDVSEVEQNPTLHRPVARISAFSVYNPTSRPTNGSSSSKILPLQSPLFQLPKAVEGACKLFDGIECEPMVPLQCSHGCCAPESGGSHSHGSSLLGPEFVDYLDSPPFLSHELISIATDLNNIAWIKSGLENHGGAKVTDNAANLTGSQGAATVSQTGFLGQGQKNDFMQMQYEEGPGKVMFLGTNTMKEMLSSKMPRQHFAMPAEV* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0378 430 CDD SANT 63 105 IPR001005 -
Amo17g0378 430 PANTHER MYB PROTEIN-RELATED 42 356 - -
Amo17g0378 430 PANTHER MYB TRANSCRIPTION FACTOR-LIKE PROTEIN 42 356 - -
Amo17g0378 430 SUPERFAMILY Homeodomain-like 58 154 IPR009057 -
Amo17g0378 430 Gene3D - 60 112 - -
Amo17g0378 430 Gene3D - 114 188 - -
Amo17g0378 430 CDD SANT 115 158 IPR001005 -
Amo17g0378 430 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 111 IPR017930 -
Amo17g0378 430 MobiDBLite consensus disorder prediction 1 64 - -
Amo17g0378 430 SMART sant 112 160 IPR001005 -
Amo17g0378 430 SMART sant 60 109 IPR001005 -
Amo17g0378 430 ProSiteProfiles Myb-like domain profile. 56 107 IPR001005 -
Amo17g0378 430 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 112 162 IPR017930 -
Amo17g0378 430 Pfam Myb-like DNA-binding domain 113 157 IPR001005 -
Amo17g0378 430 Pfam Myb-like DNA-binding domain 61 107 IPR001005 -
Amo17g0378 430 ProSiteProfiles Myb-like domain profile. 108 158 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0378 Amo-Chr17 6762189 6766047 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0378 59 392 MYB Transcription Factor Family AT3G55730 48.127 6.66e-100 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo17g0378 Myb_DNA-binding 3.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0378 K09422 - gmx:100781228 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0378 17 6762189 6766047 Amo17g0378 17 6762189 6766047 ECH