Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0362 ATGGCCTCCGCCTTCAGGGACCGCACCTCCGAGTTCCGGTCGGTGACGGAGACTCTCAAGAAGAAGATCGGAGCCCCCACTCCGCCACCGTTGCCTAACCAACCGGAAAATGCTCCCTCCTCCACCGACTCTCCGGTTCCAAATTCCAGATCCGAATTCAACCGAAAGGCCTCTCGGATCGGTTTGGGAATCCACGATACTTCACAGAAGATCGCAAGGCTCAAATCGTCGATTTTCAATGATCCGATTGTTGAGATACAGGAACTGACGGCTGTGATTAAGAACGAGATCACGGCGCTGAACGCGGCTCTTTCGGATTTACAGACGATTCAGAACATGGAGATTGCTGATGGGATGTACTCGGAGGATAGGGTTGTTCACTCCAATGCCGTTTGTGATGACTTGAAGAGCAGGCTCATGGGCGCCACAAAGAAACTCCAAGATGTCTTGACCACTAGAACAGAGAATATCAAGGCTCATGAGAATAGGAAGCAGATATTTTCCAAGAATACATCCAGAGAGAACCCTTTTCAGCATCACCCAAAGCCATCCCATGTACCACCCCCATGGTCGAATTCATTAAATCCATCTGAAGACTTGCAACAACAGTCAGCACTAACTTCAAATGGAGTACCAGTTGGCAATCAACTAAGACGAAGGTTAGCTGTGGACAATGCTCCAACCCCCCAAATGGAAATGTCTATGGTACAGCAGGTTGTTCCTCACCAAGATAATTATGCTCAAAGTCGGGCAACTGCACTGCACAGTGTTGAATCTACTATCACAGAACTTAGTGGGATCTTCACACATTTGGCTACAATGGTTGCCCAGCAAGGGGAACTAGCCATCAGGATCGATGACAACATGGAGGAAACATTGGCAAATGTTGATGGAGCTCACAGTTCTTTATTGAGGCATCTTAACAGAATATCATCAAATAGGTGGCTTCTAATTAAGATATTTGCTATTTTGATATTTTTCCTAATGATCTTCATATTCTTTGTGGCCTAA 1011 0.4639 MASAFRDRTSEFRSVTETLKKKIGAPTPPPLPNQPENAPSSTDSPVPNSRSEFNRKASRIGLGIHDTSQKIARLKSSIFNDPIVEIQELTAVIKNEITALNAALSDLQTIQNMEIADGMYSEDRVVHSNAVCDDLKSRLMGATKKLQDVLTTRTENIKAHENRKQIFSKNTSRENPFQHHPKPSHVPPPWSNSLNPSEDLQQQSALTSNGVPVGNQLRRRLAVDNAPTPQMEMSMVQQVVPHQDNYAQSRATALHSVESTITELSGIFTHLATMVAQQGELAIRIDDNMEETLANVDGAHSSLLRHLNRISSNRWLLIKIFAILIFFLMIFIFFVA* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0362 336 SUPERFAMILY t-snare proteins 48 299 IPR010989 GO:0016020|GO:0016192
Amo17g0362 336 SMART tSNARE_6 239 306 IPR000727 -
Amo17g0362 336 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 244 306 IPR000727 -
Amo17g0362 336 PANTHER SYNTAXIN 4 335 IPR045242 -
Amo17g0362 336 MobiDBLite consensus disorder prediction 155 203 - -
Amo17g0362 336 CDD SNARE_syntaxin5 247 322 - -
Amo17g0362 336 MobiDBLite consensus disorder prediction 37 55 - -
Amo17g0362 336 Pfam SNARE domain 281 332 IPR000727 -
Amo17g0362 336 ProSitePatterns Syntaxin / epimorphin family signature. 250 289 IPR006012 GO:0005484|GO:0006886|GO:0016020
Amo17g0362 336 PANTHER SYNTAXIN-31 4 335 - -
Amo17g0362 336 MobiDBLite consensus disorder prediction 1 59 - -
Amo17g0362 336 Gene3D - 48 299 - -
Amo17g0362 336 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 5 21 IPR021538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0362 Amo-Chr17 6361204 6366621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0362 1 336 SNARE and Associated Proteins AT5G05760 64.327 1.49e-143 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0362 K08490 - gmx:100777383 477.633