Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0350 GAGAAAGTTGTGGTGCACCCACTTGTGCTCCTCAGCATAGTCGACAACTACAACAGAGTCGCCAAAGACACCGCAAACGCGTCGTCGGCGTTCCTCGCTCTTCCCCTTCAAGGGCACCGTCGACTTCCCTTTGAAGAAGATGACAAGGATCCTCATATGGTTCTTGACCATAACTACCACGAGTCCATGTTCTCCATGTTTAAGAGAATTAACGCAAAGGAGCATGTTGTTGGGTGGTACAGCTCCGGCCCCAAGCTCCGAGAGAATGATCTTGACATTCATGCTTTGTTCAATGACTATGTTCCCAATCCTGTTTTGGTTATAATTGATGTTGAGCCTAAGGAACTGGGAATTCCTACCAAAGCTTACTATGCAGTTGAAGAGGTTAAAGAGAATGCCACTCAGAAAAGCCAAAAGGTCTTTGTGCATGTGCCATCAGAAATRGCTGCTCATGAAGTTGAGGAAATAGGGGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGCTACAGAGGTAAGTGGAAAACTTACAGCCTTGAAAGGTTTGGATGCAAGACTTAAAGAGATAAGAAGTTATCTTGACCTTGTCATCGATGGAAAGCTTCCTTTAAACCATGAGATTTTGTACCATCTGCAGGATGTGTTCAACRTGCTACCAAACCTTAATGTCAACGATCTGATAAAGGCCTTTGCAGTGAAAACAAATGATATGATGCTGGTAATATACCTGTCGTCCCTTATCAGAAGTGTAATTGCGCTCCACAACTTGATTAACAATAAGATGCTTAACAAAGAACATGAACGCGCAGAAGACTCAAAGTCAGTACCAGTATCAAGTACAGCTGGAAGTTAA 867 0.4337 EKVVVHPLVLLSIVDNYNRVAKDTANASSAFLALPLQGHRRLPFEEDDKDPHMVLDHNYHESMFSMFKRINAKEHVVGWYSSGPKLRENDLDIHALFNDYVPNPVLVIIDVEPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEXAAHEVEEIGVEHLLRDVKDTTISTLATEVSGKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQDVFNXLPNLNVNDLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHERAEDSKSVPVSSTAGS* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0350 288 Pfam Maintenance of mitochondrial structure and function 152 263 IPR024969 -
Amo17g0350 288 Gene3D Cytidine Deaminase, domain 2 1 172 - -
Amo17g0350 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 1 288 - -
Amo17g0350 288 SMART pad1_6 2 128 IPR000555 GO:0005515|GO:0008233|GO:0008237
Amo17g0350 288 CDD MPN_RPN7_8 1 273 IPR033858 GO:0005838
Amo17g0350 288 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 42 102 IPR000555 GO:0005515|GO:0008233|GO:0008237
Amo17g0350 288 ProSiteProfiles MPN domain profile. 3 132 IPR037518 -
Amo17g0350 288 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 7 1 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0350 Amo-Chr17 5803084 5805803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0350 5 226 Eukaryotic Initiation Factors Gene Family AT2G39990 23.276 6.18e-15 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0350 K03038 - gmx:100790393 490.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0350 17 5803084 5805803 Amo20g1577 20 42653676 42657881 ECH
Amo17g0350 17 5803084 5805803 Amo17g0350 17 5803084 5805803 ECH