Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0349 ATGGAATCGAAAGGTGGGAGCAGTAGTGGAAGCACAAGCAAGTGTGGGCGTTGGAATCCGACGGCAGAACAAGTTTCGGTTCTGAGTGAACTGTTCAGGTCTGGTCTGCGCACCCCAACCACTGATCAGATTCAGCGTATCTCCAACCACCTCAGCTTTTACGGCAAGATTGAGAGTAAGAATGTCTTCTATTGGTTTCAGAACCATAAAGCTAGGGACAGACACAACAAGCGCCGCAAGCTCTCTTCTTCCTTTCCTCATCACTCCAAGCATCTCAATCTTCTTCACTGTCAAAGTTTAGCTGAGATGTATCAAGTTTCACAGCCTGAGAATAATAATAGGGTGATTGAGACTCTTCAGCTCTTTCCCTTAAACTCTTATGTTGAATCCGAATCAGAGAAGCTGAGGGTGCATGCAAATGATGAAAATGGTGATCATCATCATCATCATCAATGCATGGATCATGATGATGATACTATGTTCTCATACACATTAATGGGAGAACAAATGGAGTATCCTCCATTGGACCTGCGCTTGAGCTTCCTCTAA 549 0.4426 MESKGGSSSGSTSKCGRWNPTAEQVSVLSELFRSGLRTPTTDQIQRISNHLSFYGKIESKNVFYWFQNHKARDRHNKRRKLSSSFPHHSKHLNLLHCQSLAEMYQVSQPENNNRVIETLQLFPLNSYVESESEKLRVHANDENGDHHHHHQCMDHDDDTMFSYTLMGEQMEYPPLDLRLSFL* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0349 182 PANTHER WUSCHEL-RELATED HOMEOBOX 7 5 148 - -
Amo17g0349 182 SMART HOX_1 13 80 IPR001356 GO:0003677
Amo17g0349 182 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 5 148 IPR044555 GO:0003700|GO:0099402
Amo17g0349 182 SUPERFAMILY Homeodomain-like 11 79 IPR009057 -
Amo17g0349 182 Pfam Homeodomain 15 75 IPR001356 GO:0003677
Amo17g0349 182 CDD homeodomain 17 77 IPR001356 GO:0003677
Amo17g0349 182 ProSiteProfiles 'Homeobox' domain profile. 11 76 IPR001356 GO:0003677
Amo17g0349 182 Gene3D - 14 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0349 Amo-Chr17 5797444 5799029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0349 4 182 Wox Gene Family AT3G11260 51.892 2.83e-58 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Amo17g0349 Homeodomain 1.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0349 - - adu:107457681 343.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1579 20 42993436 42994825 Amo17g0349 17 5797444 5799029 PCT
Amo17g0349 17 5797444 5799029 Amo20g1579 20 42993436 42994825 PCT