Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0345 ATGGAAGCGAAGGAGCAGGATGTGTCGTTGGGAGCTAACAAGTTCCCGGAAAGGCAGCCGATCGGTACGGCGGCGCAGAGCCAAGACGAGCCGAAGGACTACCAGGAGCCACCGCCAGCTCCACTGTTCGAGCCATCTGAGCTAACGTCATGGTCATTCTACAGAGCCGGAATCGCGGAGTTCGTTGCCACTTTCCTTTTTCTCTACATCACCATCTTGACCGTCATGGGCGTCAACAGAGCACCCAACAAGTGCGCTTCCGTCGGTATCCAAGGTATCGCTTGGGCCTTCGGTGGTATGATCTTCGCTCTCGTTTACTGCACCGCCGGTATCTCAGGGGGTCATATAAACCCGGCCGTGACGTTTGGGTTGTTCTTGGCGAGGAAGTTGTCGTTGACAAGGGCGGTTTTCTACATAGTGATGCAGTGCCTTGGAGCTATCTGCGGTGCAGGTGTGGTGAAGGGATTCGAGGGAAAGAACTTGTACGGAACCTATGGAGGTGGTGCCAACAAGGTGAACGACGGTTACACCAAGGGCGATGGCCTTGGTGCTGAGATCGTTGGTACCTTCATCCTTGTCTACACCGTCTTCTCCGCCACTGATGCTAAGCGTAACGCCAGAGATTCACACGTCCCTATTTTGGCACCGTTGCCAATTGGATTCGCTGTGTTCTTGGTGCACTTGGCCACCATCCCTATCACCGGAACTGGTATCAACCCTGCTCGCAGTCTTGGTGCTGCTATCATCTTCAACAAGCACGATGGATGGCATGAGCACTGGGTGTTCTGGGTTGCAGTGGTGGAGCTTAGTTCAGACAAGGGGTGGCCATGGCCCCCCCAAACTTTTTATAAAAAAATTGAGTAG 864 0.5382 MEAKEQDVSLGANKFPERQPIGTAAQSQDEPKDYQEPPPAPLFEPSELTSWSFYRAGIAEFVATFLFLYITILTVMGVNRAPNKCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVKGFEGKNLYGTYGGGANKVNDGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKHDGWHEHWVFWVAVVELSSDKGWPWPPQTFYKKIE* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0345 287 SUPERFAMILY Aquaporin-like 47 265 IPR023271 -
Amo17g0345 287 ProSitePatterns MIP family signature. 115 123 IPR022357 -
Amo17g0345 287 PANTHER MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED 1 265 - -
Amo17g0345 287 TIGRFAM MIP: MIP family channel proteins 59 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo17g0345 287 Gene3D Glycerol uptake facilitator protein. 40 267 IPR023271 -
Amo17g0345 287 CDD MIP 55 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo17g0345 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 265 IPR034294 -
Amo17g0345 287 MobiDBLite consensus disorder prediction 1 39 - -
Amo17g0345 287 Pfam Major intrinsic protein 47 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo17g0345 287 PRINTS Major intrinsic protein family signature 97 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo17g0345 287 PRINTS Major intrinsic protein family signature 220 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo17g0345 287 PRINTS Major intrinsic protein family signature 184 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo17g0345 287 PRINTS Major intrinsic protein family signature 134 153 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo17g0345 287 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0345 Amo-Chr17 5679125 5680720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0345 1 259 Major Intrinsic Protein MIP AT2G45960 85.328 2.59e-160 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0345 K09872 - gmx:100791447 479.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0345 17 5679125 5680720 Amo17g0345 17 5679125 5680720 ECH
Amo20g1573 20 42211997 42215104 Amo17g0345 17 5679125 5680720 PCT
Amo17g0345 17 5679125 5680720 Amo20g1573 20 42211997 42215104 PCT