Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0344 ATGGATGTGATAAAGACGCAGCAAATATCGTGGAGGGCGATAGAGAAAGTTGTGGTGCACCCACTTGTGCTCCTCAGCATAGTCGACAACTACAACAGAGTCGCCAAGGACACGCGCAAGCGCGTCGTCGGCGTCCTCCTCGGCTCTTCCTTCAAAGGCACCGTCGACGTCACCAACAGCTATGCCGTTCCCTTTGAAGAAGATGACAAGGATCCTTCCATATGGTTTCTCGACCATAACTATCACGAGTCCATGTTCTCCATGTTTAAGAGAATTAACGCAAAGGAGCATGTTGTTGGGTGGTACAGCTCCGGCCCCAAGCTCCGAGAGAATGATCTTGACATTCATGCTTTGTTCAATGACTATGTTCCCAATCCTGTTTTGGTTATAATTGATGTTGAGCCTAAGGAACTGGGAATTCCTACCAAAGCTTACTATGCAGTTGAAGAGGTTAAAGAGAATGCCACTCAGAAAAGCCAAAAGGTCTTTGTGCATGTGCCATCAGAAATCGCTGCTCATGAAGTTGAGGAAATAGGGGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGCTACAGAGGTAAGTGGAAAACTTACAGCCTTGAAAGGTTTGGATGCAAGACTTAAAGAGATAAGAAGTTATCTTGACCTTGTCATCGATGGAAAGCTTCCTTTAAACCATGAGATTTTGTACCATCTGCAGGATGTGTTCAACCTGCTACCAAACCTTAATGTCAACGATCTGATAAAGGCTTTTGCAGTGAAAACAAATGATATGATGCTGGTAATATACCTGTCGTCCCTTATCAGAAGTGTAATTGCGCTCCACAACTTGATTAACAATAAGATGCTCAACAAAGAACATGAACGCGCAGAAGACTCGAAGTCAGTACCAGTATCAAGTACAGCTGGAAGTTAA 933 0.4427 MDVIKTQQISWRAIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSSGPKLRENDLDIHALFNDYVPNPVLVIIDVEPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSGKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNVNDLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHERAEDSKSVPVSSTAGS* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0344 310 Gene3D Cytidine Deaminase, domain 2 10 194 - -
Amo17g0344 310 CDD MPN_RPN7_8 15 295 IPR033858 GO:0005838
Amo17g0344 310 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 1 310 - -
Amo17g0344 310 ProSiteProfiles MPN domain profile. 17 154 IPR037518 -
Amo17g0344 310 Pfam Maintenance of mitochondrial structure and function 174 285 IPR024969 -
Amo17g0344 310 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 13 124 IPR000555 GO:0005515|GO:0008233|GO:0008237
Amo17g0344 310 SMART pad1_6 16 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Amo17g0344 310 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 7 1 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0344 Amo-Chr17 5637499 5640768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0344 19 248 Eukaryotic Initiation Factors Gene Family AT2G39990 29.060 2.68e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0344 K03038 - gmx:100790393 584.334