Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0340 ATGTCTGAAGCTTTGATCAATGGCTTGGCTGGTGCTGGTGGAGGGATCATAGCTCAGCTCATCACATACCCTCTTCAAACTGTAAACACTCGTCAGCAAACAGAGCGTGATCCGAAGAAGGATAAGACCAAAAGCATAGGAACTCTCCAGCAAATGTGCCAGGTTGTGAAACATGAGGGGTGGGAGCGGTTGTATGGAGGTTTGATGCCATCTCTAGTGGGTACAGCTGCATCTCAGGGTGTTTATTATTATTTCTATCAAATATTCAGGAACAAAGCCGAAGTGGCTGCACTAGAACAGAAAAGGCTAGGCATTGGCGATGGATCAGTTGGGATGTTCTCCTCACTTATTGTTGCTGCTTTCTCTGGGTGTGTTAATGTGCTATTGACAAATCCCATATGGGTAGTTGTTACGCGCATGCAGACGCACAGAAAAGAGTCAAGCAGAACTCCGCCTGGTGATGTGTTGTTAAATGCTACTGAACAAGCATTACTTCCCGCAGTTGAGCCTCTTGCTTATGGAACTAGTGATGTGATTCAAGAAGTCTACGGTGAAGCCGGAGTTTGGGGGTTTTGGAAAGGTGTATTACCGACATTGATCATGGTAAGCAACCCTTCTATACAGTTCATGCTCTATGAAACCATGTTGCTGAAGTTAAAAAGAAGACGTAGCCAAAGTAAGAAGGGCAACAATGGAGTATCTGCATTGGAGGTATTTCTTCTTGGAGCTTTGGCTAAGCTTGGAGCTACTATTGTGACATATCCTCTTCTAGTTGTGAAGGCAAGGCTGCAAGCTAGACAGGTCCGAAATGGAGACAAGAGACACCATTATAAAGGTACATTGGATGCCATTATCAAGATGATCCAGTATGAAGGGTTTTATGGATTTTACAAAGGCATGAGAACTAAGATTGTTCAAAGTGTGCTAGCTGCTGCTGTTTTGTTCATGGTGAAGGAAGAACTAGTTAAACAAATTCGTTTCTTGCTCACTAAGAATGCCACCAACTCTGTAAAACCAAAGCTTGTGTGA 1029 0.4363 MSEALINGLAGAGGGIIAQLITYPLQTVNTRQQTERDPKKDKTKSIGTLQQMCQVVKHEGWERLYGGLMPSLVGTAASQGVYYYFYQIFRNKAEVAALEQKRLGIGDGSVGMFSSLIVAAFSGCVNVLLTNPIWVVVTRMQTHRKESSRTPPGDVLLNATEQALLPAVEPLAYGTSDVIQEVYGEAGVWGFWKGVLPTLIMVSNPSIQFMLYETMLLKLKRRRSQSKKGNNGVSALEVFLLGALAKLGATIVTYPLLVVKARLQARQVRNGDKRHHYKGTLDAIIKMIQYEGFYGFYKGMRTKIVQSVLAAAVLFMVKEELVKQIRFLLTKNATNSVKPKLV* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0340 342 ProSiteProfiles Solute carrier (Solcar) repeat profile. 2 92 IPR018108 -
Amo17g0340 342 SUPERFAMILY Mitochondrial carrier 4 320 IPR023395 -
Amo17g0340 342 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 1 340 IPR044712 GO:0006862|GO:0055085
Amo17g0340 342 PANTHER PEROXISOMAL NICOTINAMIDE ADENINE DINUCLEOTIDE CARRIER 1 340 - -
Amo17g0340 342 ProSiteProfiles Solute carrier (Solcar) repeat profile. 110 218 IPR018108 -
Amo17g0340 342 Gene3D Mitochondrial carrier domain 3 326 IPR023395 -
Amo17g0340 342 ProSiteProfiles Solute carrier (Solcar) repeat profile. 233 324 IPR018108 -
Amo17g0340 342 Pfam Mitochondrial carrier protein 6 91 IPR018108 -
Amo17g0340 342 Pfam Mitochondrial carrier protein 110 219 IPR018108 -
Amo17g0340 342 Pfam Mitochondrial carrier protein 234 323 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0340 Amo-Chr17 5540051 5544419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0340 24 336 Chloroplast and Mitochondria Gene Families AT1G25380 27.900 2.95e-30 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0340 K13354 - gmx:100775784 538.495