Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0335 ATGGAATTGGAAAGCGTGTATCCTGGCTGGAATTGGAACTGGAATTTGTTAGAGCAAGAGAGGCAGAGCAGCAGCAGAGAATGGAGTAAAGAGGACAACAAGAAGTTCGAGAGTGCGCTGGCGATATTCGACAAGGAGACGCCGGATAGGTGGCTGAAGGTGGCTGCTATGATCCCCGGAAAGAGTGTGTATGATGTGATCAAGCAGTACAGAGAGCTGGAAGAAGATGTCAATGATATAGAAGCCGGCCGGGTCCCTGTCCCCGGCTATATCGCCTCTTCTTTCACCTTCGAGCTTCTTCACCACCACAACCATGATGGATCTCGAAGAAGGCCTAATACCCCAAGACCTTCTTCTGATCAAGAAAGGAAGAAAGGTGTTCCTTGGACTCAGGAGGAGCACAGACGTTTTCTGATGGGGCTTTTGAAGTATGGAAAAGGAGATTGGAGAAACATTTCGCGAAATTTCGTGGTGACGAAGACTCCTACACAAGTTGCTAGCCATGCTCAGAAGTATTACATAAGGCAAAAGGTTTCTTCAGGAGGGAAAGATAAGAGGAGACCCAGCATCCATGATATAACAACTCTTAACCTCGCAGAAGCCACTGCAACTTTAGATGATAATAATAATAATATCAACAAGCCCCTCTCATTCAATGAGTCTAAAGTGCAATTGGATTGGTTCAATCACTGTAATGATGATGGATCAGTGATGGTTTTCGACCCCAATTGCGACCATTTGCAAGAGCAGGATCTCTTTGATTGTGCTTTCCATGAAGCTTATGCAAAGCTCAAGATCCCGCATTTCAACAAGGAAGCTGATTTTGGTATTCATGCATTGTAA 843 0.4508 MELESVYPGWNWNWNLLEQERQSSSREWSKEDNKKFESALAIFDKETPDRWLKVAAMIPGKSVYDVIKQYRELEEDVNDIEAGRVPVPGYIASSFTFELLHHHNHDGSRRRPNTPRPSSDQERKKGVPWTQEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSSGGKDKRRPSIHDITTLNLAEATATLDDNNNNINKPLSFNESKVQLDWFNHCNDDGSVMVFDPNCDHLQEQDLFDCAFHEAYAKLKIPHFNKEADFGIHAL* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0335 280 Pfam Myb-like DNA-binding domain 128 172 IPR001005 -
Amo17g0335 280 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 14 259 - -
Amo17g0335 280 SUPERFAMILY Homeodomain-like 122 177 IPR009057 -
Amo17g0335 280 SUPERFAMILY Homeodomain-like 26 80 IPR009057 -
Amo17g0335 280 Gene3D - 19 87 - -
Amo17g0335 280 MobiDBLite consensus disorder prediction 103 129 - -
Amo17g0335 280 ProSiteProfiles SANT domain profile. 23 78 IPR017884 -
Amo17g0335 280 CDD SANT 27 73 IPR001005 -
Amo17g0335 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 121 177 IPR017930 -
Amo17g0335 280 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 124 176 IPR006447 GO:0003677
Amo17g0335 280 CDD SANT 128 172 IPR001005 -
Amo17g0335 280 Gene3D - 127 178 - -
Amo17g0335 280 SMART sant 24 76 IPR001005 -
Amo17g0335 280 SMART sant 125 175 IPR001005 -
Amo17g0335 280 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 14 259 IPR043363 -
Amo17g0335 280 ProSiteProfiles SANT domain profile. 129 177 IPR017884 -
Amo17g0335 280 ProSiteProfiles Myb-like domain profile. 121 173 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0335 Amo-Chr17 5377683 5379648 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo17g0335 Myb_DNA-binding 2.4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0335 - - gmx:778039 367.466